Gbil000450.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010020013.1:1006-3159[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0087 45 4.5 0.1 25 44 244 263 226 271 0.72 2 5 0.0045 23 5.4 0.0 22 45 269 292 265 295 0.88 3 5 1.7e-05 0.085 13.2 0.2 21 45 296 320 293 324 0.88 4 5 0.0046 24 5.3 0.0 18 49 321 352 319 357 0.86 5 5 0.24 1.2e+03 -0.1 0.1 26 44 358 376 352 380 0.76
Sequence Information
- Coding Sequence
- ATGAACATTAAAATCGATATTAACGTTTGCCGTGTGTGCCTGCAAACGGGTTCCGGAACTTCATTGTACCGGGAACCATCATTTGCGGAACAATTTGAGGCAGTCACTCAACTGCAGCTCGAGCAAAGCGATGGACTGCCGGAAACGTTGTGCAAGAAATGTGTGGCTCGACTCAAATTGGCATTCGAATTCAAGCGACAAAGTGAAGCATCCGATCAGCATTTGCGTAGTTTCATTCTCGAAGTGAACAGTAAGTTCAGCAAAGTGACAAGCAGCGATGATGTGACCGAGGAAGAAGAACTGCAAATGCTACTCGAAGATGACTACCAACCGGAACCTGTTGAATTGAAACCAACCGTTCTTAATAAGCAGAATGCAGTGGTGGCTTCGTCCATAAAGCATCCAAAGTTTGTGGCAAAAAATTCAACAAAAGCTGTACCACAACCTACGCCAGTCAAATTGATAACAAAACCCGAACCACAGAACATTGTTGAGGAGGAACAAGAAACTATCGTCGGCGATGATGATCGAATGGACGAAGACATTTTGTACGACGAAGGTGAGGCGGAACATTTAGATGCCGATGATAGTCAGGACGATGGTAGCGAGTACAAATATTTACAGCAGAATTTCAACGGTACCGAAGAGTACATCGATGAAGAACCATTGATCGAAAACGTGCCGGGCAAGAAACGACGTCGCATTAAGATCGAAGACGATGGCTCATCACCATCGTGCCCTATTTGCAAAAAAAATTTCAGCAGCAAAACGAATATGTTGCGACACATGCTTACGCATTCGGGTCAGAAACCCTTTCAATGTTTGGTATGTAGTGCTGGCTTTACGCAGAGTGGTTCGCTCAAGCAGcacatgtacattcatacgggcgagcgtccgtatcagtgcccaatttgtaattcggcgttcactcaaagcaaaacactcaagtttcatatgcgccggcacaccggcgaaaagccttttccttgtctcgagtgcggtgtatcgttccgacaacgtgacggcctcaagCGCCACGAATTGGTTAAACACGGAGATGCACCCACTTTTGAGTGTCCGCAATGCTATCAGCACTTGACTTCGAAGCATTCACTTACCGTACATATGCGAAAGCACAGCAATCGTGAAAAAGTCTCGGTCATCGAATACAAGTGTGATGAATGCGACAAGAAGTTTGCCAGCAAAGCTTCATTGATGAATCATCAGCGTCAACATGGTCATCTTCAGACGGAAAATAAAACCAACCCTAAGCTATACAAATGCGGTGAATGCTACAAATCGTTTTCCGTCAAgcaaaattggattaatcacacgaaaacgcataacacagaaattggcggcggcgacaacgacgaggacaaaaacgacaacgatgacgacgacgacgacgacgacgacgacgcagcagcagcagcaccggaaagcaatgcatcaatcgatctgaatgattgtgatatttGCAACATTTCTTTCGCTCATATGGCCGATCTGACCGATCACATTAAAACCGAACACGATATAATCGATGAAAAGTGTCCGCAATGCGACGAAGACTTTATTTCACAATCGCTACTAGACGAACACATGCTCCAGCATGAGATCAACGATATCGAAGCATAG
- Protein Sequence
- MNIKIDINVCRVCLQTGSGTSLYREPSFAEQFEAVTQLQLEQSDGLPETLCKKCVARLKLAFEFKRQSEASDQHLRSFILEVNSKFSKVTSSDDVTEEEELQMLLEDDYQPEPVELKPTVLNKQNAVVASSIKHPKFVAKNSTKAVPQPTPVKLITKPEPQNIVEEEQETIVGDDDRMDEDILYDEGEAEHLDADDSQDDGSEYKYLQQNFNGTEEYIDEEPLIENVPGKKRRRIKIEDDGSSPSCPICKKNFSSKTNMLRHMLTHSGQKPFQCLVCSAGFTQSGSLKQHMYIHTGERPYQCPICNSAFTQSKTLKFHMRRHTGEKPFPCLECGVSFRQRDGLKRHELVKHGDAPTFECPQCYQHLTSKHSLTVHMRKHSNREKVSVIEYKCDECDKKFASKASLMNHQRQHGHLQTENKTNPKLYKCGECYKSFSVKQNWINHTKTHNTEIGGGDNDEDKNDNDDDDDDDDDDAAAAAPESNASIDLNDCDICNISFAHMADLTDHIKTEHDIIDEKCPQCDEDFISQSLLDEHMLQHEINDIEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753961;
- 90% Identity
- iTF_00753961;
- 80% Identity
- iTF_00753961;