Gbil005221.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010019095.1:396-1992[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.11 5.4e+02 1.0 0.1 25 45 194 214 179 220 0.81 2 8 9.4e-05 0.48 10.8 0.1 25 45 221 241 217 248 0.87 3 8 0.059 3e+02 1.8 0.0 21 44 245 268 242 273 0.87 4 8 0.22 1.1e+03 -0.0 0.0 6 45 307 345 304 351 0.75 5 8 0.9 4.6e+03 -2.0 0.0 21 43 386 408 381 413 0.79 6 8 0.018 93 3.5 0.0 21 44 414 437 410 442 0.88 7 8 0.0056 29 5.1 0.1 21 46 442 467 437 473 0.85 8 8 7.9e-05 0.41 11.0 0.3 22 49 471 498 468 501 0.92
Sequence Information
- Coding Sequence
- ATGAATCCAAAGTTGTGCAGAGCCTGTATGCAAGTGAACTCAGAACTTTACCCATTGCTCGAAAACTACAGACAATATCATCTGTGCGACATCATTGGCGAACTGACCGGGATATGGATAGACACCACCAACCTCGATGATCTGCCCACAGCCATTTGCAGTGAATGCGCTGCTAAGTTAATCGAGGCTCACGAGTTTCGCCGCCAGTTCATAGCATCAGATGCGTTGCTTCGTCGGGTGAGACTCGATGTAGATGTGAAAGAGACAAAAACAACTTTAAGTAGCTCCATATCAGAGGGAATTGACTGGAATGAAGGACTCGTCGACAATGATGATTTGGATTATCTGGATTTGGACTTGGAAGTGGTGAACATTGCGAGCAACCGTATCGTTGAGTCGTCGTCGGAATCGCAATTTAATGAATTTGTTAGTGCTCAGGGTATTGTTGTGCTCGAATCACGTACTTTGGAGAAAACGCATGTGCCAACATTATCACAACAACCTACCGTAAGCATTGAGAAAAAGTTTGCAATAGCTGAAAAAAGATCTGGTAAACCCCAAATGACAATTGAAAGCCAATTTGAGTGTGACACTTGCAGCAAAGTACTGCAAAATGAAATGTCCCTGAAGCGCCACCAAAACTACCATCGCAAAGACAAGTCCAAATGTCCGCTGTGTTCGAAGCTGTTTTCGCACTCtagtaacctgaagcgacatttgctcgttcacaaagacgaacaaccgctcgcctgtgacaagtgcCCGAAAACGTTCAGCCAAGCCAACGCTCTTTACGACCATATGAAAGAGCATCGAACCGAAGTGCCCACTACAACGGATAGCACCGATACCATTGTCCAACACTACGTCATGCAATGTGAAATTTGCCTCGAACAGACCGAATCGTTTGCCTTGTTTGCTAAACATATGCGCAAGCAGCACCAGATTACGGATCGTTCTCAAATCAaaccgtttaagtgtgacgtatgtggcatgcactttgcatccaagcaaggaatgtaccgacacgtagataatattcatgagaacaatcgtcgtaatctacggtgtcgcgataagaactttctatgtaatacgtgtggcaagagcttcttcacaaatttccatttagacgtgcacgttcgatcgcacacgggcgagcggccgttcaagtgtctgttctgtgacaaggcattttcgcaaatgtctggcctcaaaatgcacacattcacgcatactggtgagcggccgttcacgtgcaaactatgcccgaaaacgttcaaccaatacgggcatgtgcgcgagcacatgatgacccattctgcagaacgaccacatgtttgtgccgtgtgcaatcgttcgttccgagtgaagggaaatctcaccgcacacatgctcatccatagtggcaaaaaaccgtacacttgcgaacagtgtggccgacggttcgtgcAAGCAACTAAATTGAGGCGCCATATGGAGAAGAAGCATGTGAATATTACAACAACGGATGCCACACCTTGA
- Protein Sequence
- MNPKLCRACMQVNSELYPLLENYRQYHLCDIIGELTGIWIDTTNLDDLPTAICSECAAKLIEAHEFRRQFIASDALLRRVRLDVDVKETKTTLSSSISEGIDWNEGLVDNDDLDYLDLDLEVVNIASNRIVESSSESQFNEFVSAQGIVVLESRTLEKTHVPTLSQQPTVSIEKKFAIAEKRSGKPQMTIESQFECDTCSKVLQNEMSLKRHQNYHRKDKSKCPLCSKLFSHSSNLKRHLLVHKDEQPLACDKCPKTFSQANALYDHMKEHRTEVPTTTDSTDTIVQHYVMQCEICLEQTESFALFAKHMRKQHQITDRSQIKPFKCDVCGMHFASKQGMYRHVDNIHENNRRNLRCRDKNFLCNTCGKSFFTNFHLDVHVRSHTGERPFKCLFCDKAFSQMSGLKMHTFTHTGERPFTCKLCPKTFNQYGHVREHMMTHSAERPHVCAVCNRSFRVKGNLTAHMLIHSGKKPYTCEQCGRRFVQATKLRRHMEKKHVNITTTDATP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00753959;
- 90% Identity
- iTF_00753959;
- 80% Identity
- iTF_00753959;