Gbil019883.1
Basic Information
- Insect
- Gnoriste bilineata
- Gene Symbol
- -
- Assembly
- GCA_026546565.1
- Location
- JANSWN010056491.1:800-1900[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00075 3.8 7.9 0.0 23 48 101 125 88 128 0.74 2 3 8.3e-06 0.042 14.2 0.3 25 48 181 203 169 206 0.82 3 3 0.0013 6.8 7.1 0.1 25 48 318 340 308 343 0.84
Sequence Information
- Coding Sequence
- ATGCTGGCACATAAACTGCAAGTTCATCTGTTTACGCAAGCCGGTTGGGCAAAGATTTCAACCTTTCTAAACGACCTATTTGCAGAAGAAACCCTCTGCGTTTCCGATGAAGAATTCAACTACACCTTTCGAGTTACCACTACCGTGCAAAAAATCCCAAAGGCTGCAATGAAATCGGATGGTTCTGAATTACAATCATCATCGAATATGGATTTTTTAGGAATGCGAATGGATCCAGTTAAACTAACTATTATCAATCAACCAGACGTTAAGCCGAAAACAAATAAAAATGAAGATAAACGCAGATCTTCGTGTTCATTGTGTGGAAAAACAATGTACACGAGAAATATGAAGCGGCACATTGAAATTATGCATGCGACAATGTTGAGCATGCCAAAAATGGAATACAACAATAAGCAATATCAGCATAGTCAAATCGTTGAGAATGCATTTCGTATGGCCAAGAATGATAAGCTAGCAATAAATGTGCCAAATAATGAATTTGTTCACCGTCCACATAACGAAGATAAAGGCAGTCGATCGATGTGTCCGATATGCGGACGAAATATGTACACCAGAAACGTAAAGCGTCACATAGAAATTAGACATGGTACAGGTACCGTTAATGGGACTGGTATCAGTATGGATTTTGATTCGAATCATTCATCGTTAAGCAAAACATACGAAAACAATGAAGCACAAATAGCTACGCAAAATATCGAAGGTTCAGCAAGTGCTCATCAGGCAGCATCGGGTCATCAAGCTTCTTCGGCTCAAATAAGTATTATGCCTGATATACCGGCAAGAAATTTACTCGGTATGATGGTTGATCAAGCGTATGCAACCCACAATAATACCACAACAAACGTTATGCAACAATATAATCAACCTAATAATCAATCGCTCAACGAACTTGATCAACAATCAAAAGCTCGTTACAAGGATTGCAAATCCAAGTGTCCAATATGTGACAAAGAAATGTACGGTAGAAATGTAAAACGTCACATGCAAGTCATGCATCCCGtagtcgtaagtgcaccacaacaacaacaacaacaacaacaacaacCTACCGAAGATCGACACCTGCACGTAGATTAA
- Protein Sequence
- MLAHKLQVHLFTQAGWAKISTFLNDLFAEETLCVSDEEFNYTFRVTTTVQKIPKAAMKSDGSELQSSSNMDFLGMRMDPVKLTIINQPDVKPKTNKNEDKRRSSCSLCGKTMYTRNMKRHIEIMHATMLSMPKMEYNNKQYQHSQIVENAFRMAKNDKLAINVPNNEFVHRPHNEDKGSRSMCPICGRNMYTRNVKRHIEIRHGTGTVNGTGISMDFDSNHSSLSKTYENNEAQIATQNIEGSASAHQAASGHQASSAQISIMPDIPARNLLGMMVDQAYATHNNTTTNVMQQYNQPNNQSLNELDQQSKARYKDCKSKCPICDKEMYGRNVKRHMQVMHPVVVSAPQQQQQQQQQPTEDRHLHVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -