Gcor010557.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055514.1:4958375-4959930[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.025 2.8e+02 2.1 0.2 26 37 119 130 108 143 0.74 2 5 0.033 3.8e+02 1.7 0.0 22 45 145 168 136 175 0.79 3 5 0.00026 3 8.4 0.1 22 46 173 197 167 199 0.89 4 5 1.8e-05 0.21 12.1 0.1 21 52 200 231 196 231 0.88 5 5 0.001 12 6.5 0.0 21 48 228 255 226 258 0.90
Sequence Information
- Coding Sequence
- ATGGAAAATGCTCAAGAAAGAGATTTTCATAGAACTTTGGAGCCTGATGTGATCATTAATCATGAATCTAGTGAAGATGAGGAAGATATTAGCATCAAAAGTAAATCATGTTGCCCCTCAGTGAACAAGAGCCTTCAGTCAGCGAAATCCCAACCAGACATATCCATAATCCCCTTAAATAAGAAATCTCAAATCAAAATAAGACTATTTAATAAAGAATACTCTCCGTCAAAGGACGACGTAAAAGTACAAATCATCTCTCGATCTCCTCGGCAAACGGTAAGACTGGTATCAAAAGACGAAGCGGAAAGTGCCGGCGATACTTACACTCGTCGAAAATCACTTCCTTTAGAAAAATGTccaatttgtaaaaaattctttCGTCGAATGAAAACGCATTTATTAAAACACGAGCATACTAATCGAAATCCTGATGATCCTCTCACGTGCACGTTTTGTATGAAAGGTTTTAATACCCAGAGTAATTTACTTATTCATATGAGGACACACACTGGAGACAAACCGTATATTTGTGAAGTTTGCCATAAAGGATTTGCTCAGTCGTGTAATCTTGTTAATCACTTGAGGATTCATACGGGGGAAAGACCATTCAAGTGTCCTCATTGTGATAGAGCTTTTACTCAATCAGGTAATCTTAATAATCACATAAGGCTGCATACAGACGAAAAACCATTCAAGTGTCATTTTTGCGATAAAGCGTTTGTTCAATCGGGGAATCTCAACTCGCATATTAGAAACAATCATAAGATTGTTGAGGATGTTTCTAAGGAGATTAGTGAAGAAGGCGAGGACTTCAACTGCTAG
- Protein Sequence
- MENAQERDFHRTLEPDVIINHESSEDEEDISIKSKSCCPSVNKSLQSAKSQPDISIIPLNKKSQIKIRLFNKEYSPSKDDVKVQIISRSPRQTVRLVSKDEAESAGDTYTRRKSLPLEKCPICKKFFRRMKTHLLKHEHTNRNPDDPLTCTFCMKGFNTQSNLLIHMRTHTGDKPYICEVCHKGFAQSCNLVNHLRIHTGERPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLNSHIRNNHKIVEDVSKEISEEGEDFNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00639814;
- 90% Identity
- iTF_00415410;
- 80% Identity
- iTF_00753302;