Gcor010115.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055513.1:18186599-18189949[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0029 33 5.0 0.0 19 45 155 181 149 187 0.89 2 9 0.094 1.1e+03 0.2 0.1 26 52 272 298 265 300 0.84 3 9 0.062 7.2e+02 0.8 0.1 22 52 296 326 288 328 0.84 4 9 0.0034 39 4.8 0.0 23 46 325 348 322 354 0.85 5 9 0.0077 89 3.7 0.0 21 48 351 377 347 380 0.87 6 9 0.012 1.3e+02 3.1 0.1 23 47 409 433 401 439 0.81 7 9 0.046 5.2e+02 1.2 0.1 21 43 435 457 426 462 0.82 8 9 0.00096 11 6.6 0.0 21 52 463 494 455 495 0.85 9 9 0.0039 45 4.6 0.1 21 44 491 514 487 523 0.87
Sequence Information
- Coding Sequence
- ATGTTGGAAGAAAACCCCTCGAATATATGTCGTATATGTCTTACAGAAACAGGAGAATTTCAGTCAATATTTATATCCGACGAGGAAACCCGCCTTTCCATGCATCTTTCAGAAATGGTGATGGCTTTTGCTTCTGTGCAGATAACCCTGGGCGACGGTTTACCCGAAACAATCTGCAGTACGTGTGCCACCACCACTgtcaagttttatttatttaaacaaaaatgtGAAGAGTCAGAAAAAGTTCTCAGGAGCAAACTGGGGCAAAGCCCCCATCGTGAGCACGTATCCCTTGAAGAAAAACCGCCCGTAGACAATAAAGACAACGTCGACGTGTATGACATTGTGATAAAACCGGAGATAAACTCTGGAGATTCAGAACTTCAAAATGAAATAAGTGAtgagtttgacagttttaatgtgCAGGATAAAAGTGACAGTGAAGACGAATCTCTGGAGATCTCCGCGAGTGAGAAGGAACTTTCGTGTCCACATTGTTTAAAAGTGTTCACTAAAGAAAACGCTTTGAATCATCATATTAAAACACACGCAATCAAAGCATATTCATGTACTATTTGTGCTAAGTCGTTTTCCCGTAATGATTTGTTGTTGAGGCATAAAATAGCGCACGCGATGAAGATGGCTGATCAGGCTTTTGATCTTGTGGATTCAAGTGATGAGTTGGAGCAGGAAGAAGTTGTGATTAAGACAGAAAATGCCTTGTATTCCTGTGGGGATTGTAACATGTTGTTTGGGAAGAAGGAGCAGCTTGATTCCCATATACATGACCATGGGAAGAATAAAGATAGTATAGTTTGTACAGTTTGTGGGAAGAAATTCAGTAAGCAAGCGCATTTGAATAGGCATATGAAAATTCATTCCCAGAATAAACCATATATTTGTACTACTTGTAACAAAGGATTTGTTAGATCTGAGCAGCTGAATAATCATATGAACATACATTCAGGCATCAAACCGCATATTTGTGCTATTTGTTTAAAAGGCTTCAACCAAATCTCGAATTTAAAAGATCACATGCGCACCCACAACGGCGAGAAACCCTTCTTGTGTTCAACCTGCGGCAAAGGCTTCAACCAACTGGGAAATCTCCGCCAACACACCATCCGACACAGCGGTATCAAAGCCCACCTCTGCAGCACTTGTGGAAACGGCTTCGCGAGCAAAGGAGAACTCTCAGCACACCTTCGAAAACACACAGGCGCCCGTCCCTTCGTCTGCCCCGTTTGCAACCACGGCTTCACCACCTCAAGTTCTCTAACGAAACACAAACGAATCCACTCAGGAGAAAAACCCTACGAATGCGACGTGTGTAAAATGAAATTCTCGCGGTCGGGGATTTTAGCGAGGCATAAACGAACGCACACAGGTGAAAAGCCGTACGTCTGTAAATTCTGCGGGAAGGCGTTTTCACAGTCGAATGATCTCACGTCGCATTTGAGGATCCATACGGGGGAGAAGCCGTATATTTGTGATGAGTGTGGACAGGCGTTTAGACAGAGTTCCGCGTTGAAGACACATAAAAAGACGCATGTTGATAAGAATTCGGTGGTGGATATCAAACCGCCCATTGGGACTCTTCAGGCTCCGTTTTTGATGTAG
- Protein Sequence
- MLEENPSNICRICLTETGEFQSIFISDEETRLSMHLSEMVMAFASVQITLGDGLPETICSTCATTTVKFYLFKQKCEESEKVLRSKLGQSPHREHVSLEEKPPVDNKDNVDVYDIVIKPEINSGDSELQNEISDEFDSFNVQDKSDSEDESLEISASEKELSCPHCLKVFTKENALNHHIKTHAIKAYSCTICAKSFSRNDLLLRHKIAHAMKMADQAFDLVDSSDELEQEEVVIKTENALYSCGDCNMLFGKKEQLDSHIHDHGKNKDSIVCTVCGKKFSKQAHLNRHMKIHSQNKPYICTTCNKGFVRSEQLNNHMNIHSGIKPHICAICLKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCGKAFSQSNDLTSHLRIHTGEKPYICDECGQAFRQSSALKTHKKTHVDKNSVVDIKPPIGTLQAPFLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415303;
- 90% Identity
- iTF_00415303;
- 80% Identity
- iTF_00753187;