Gcor010329.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- Prdm4
- Assembly
- GCA_029298725.1
- Location
- CM055513.1:19717220-19719737[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.6e-06 0.00013 22.6 1.2 3 23 238 259 237 259 0.96 2 11 0.00017 0.013 16.3 1.2 1 23 347 369 347 369 0.98 3 11 0.002 0.16 12.8 5.1 1 20 373 392 373 394 0.94 4 11 1e-06 8.1e-05 23.2 1.5 1 23 399 422 399 422 0.95 5 11 2.4 1.9e+02 3.1 5.2 1 19 426 444 426 447 0.92 6 11 8.8e-06 0.00069 20.3 3.0 1 23 457 479 457 479 0.98 7 11 0.015 1.2 10.1 2.5 2 23 491 512 490 512 0.97 8 11 0.00087 0.069 14.0 1.3 1 20 517 536 517 539 0.94 9 11 0.012 0.94 10.4 4.1 1 23 545 567 545 567 0.98 10 11 2.2e-06 0.00018 22.1 0.6 2 23 574 596 573 596 0.96 11 11 3.4e-05 0.0027 18.4 2.3 1 23 607 630 607 630 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCCCAGTTCATTACGATGGTGCAGGAAGCCTTAACACCCGAATGTTGTCTTATCTGTGGGAAGAACCACGACATCCGATACTGTGATTacgtaaaaattgaaaaacatGTACCTGATACTCCAATTCCGTCGCGAGCGAGACTCACCCTGCCAAGTTTTCTGGAGGTGCAAATGTTGAGCGACGGTGCTTATTTTATCATAACTAAGAATCCCATAAGTAAAGGGACAAAGTTTGGGCCTTTTCAGGCGGAAAAATCTGAGAATTTGGAGCCCAAAGTTTCGTTCCCTTTGAAGTTATTTGAGTCTAATGGCAATAAGAGCTGCGAGTATTATTTGGACACCAATAATGAAGAAAGATGTAGCTGGCTGATGTTCGTGGGGGCTGCCGAATTTGCCGAGGAACAGAATCTGATTTGTTACCAGGAAAAAGAGCACATTTACTACGTTGCTATTAAAAACATCCCTGAAGGCGGCGTTCTCAAAGTGTGGTATTCCCCTCATTATGCCCTAAAGATGAACAAGACACTCTTGCCCCCTAAACCCATTGAAGTTCCTTTAATTGATGTCAACAGTCTcattaaaaaacaacaaaagatcATGGAACGTAAAGTTTGGACATGCAAATTCTGCAGCCACATGGAACACAACATCGTCTCTTTCGCGAGACACATTCTCAAACACTACACTGCTCAACACAAGAACATGTGCGAGATTTGCAAGAAGACATTTGGATCAAAAAGAAACTTGAAAAACCacatgaaaatcgttcatcaGGTGTTTCTTTCAACGTCGCCCCCAAAACTTGCGAAGGCAACAGTCACCGTTCAACCGCGCTGTAAAGATGTGGCTCTCGGAGGGCCTCTGCTCAACGATATGTTCACTGATAGTTCAGATCTCAATCAGCTTGATCTCAATTTAGACAATCAGAATTTGTTACTTGATAACGACAATTTAACTGTTGAGAACCTCCTCAACGATAACGTCAAGGATTTGGATCATTTCAACTTTGAAATCGACGACAGTCAGAAGCAGTTCGTTTGTGATATTTGTCTTAAACAGTTCACCAAAGCAAAGTTGTTGATCATACATTTAAGGCACCACACTGGGGATTTCGTCTGCTACAAATGTTTAAAGGTTTTTTGTCGCAAAGAGAACCTGAAATCCCACGTCTGTAATATAAGCAATCAGTTTCGTTGTTCGATGTGCGACAAGGTGTTCACCCAAAAAAAATACCTCTCGCGGCATCTCCAGGCGATTCACAACAAGAAATTCCACTGCGTGTCTTGTAATAAGAGCTACCACTCTAACAAAGAACTCTCGGAACACAACTGTAGCAAAGTCCCCGACATGGAGAAAGAGAAATTCGTTTGTCCCATCTGTAGCAAGCACTTCTACAGAGATATCTACTTGAAGAGACACCTCCGCACCCATGGCCCTAGGAGTAAGTCGTCGAAGCGATCAACCACTTGCGAGGTCTGTGGACTGCACCTAACATCCAAAACGTCTTATTTCTCCCACAGGAAAATCCACGAAGAACCGACTTTTTCATGCGAGATTTGCGACAAGAAGTTCAAACGTGCGGATATTCTAAAAGAACATATAGCGTGTCATCAGGAGCCTCACCAGTTTGAGTGCCACATCTGTCGGAAGACGCTAAAAAGTAAGAAGATCCTAAACACCCATTTGAAGCAACACAATTCTTTGTATTCCATCAAGTGCCCTATTTGTGAAGTTGTGTTTAAACGACGCAACAGTCTTAATACGCACATGAGAAACTACCATGAGAGGAAAAAAAGCACGACGTTCGAGTTCTACACTTGTCCCGTTTGTAACAAATCGATAAAACTCAAGAGTTCGCTTCATCGACATCTGAAGAGAGTCCACTCTGACTTGAACAAAATCGATCTGAGTAGTATCACTCCGAAAATTActagaaataagaaaaaagagAGTCTTCAGACTGAGGTAGACGACCAAATTAGTAGCTTGTTGACCAGTGCGGAAAACAACGCGGCTATAGAGAAACACGCCGTTGATAGCCTGGTGGAGGAGCTGGATATCGAGAGGAAGAAGAGTGAAAAAGAAGTGTGTCTGTCCATTCCAGAACTCACTGAGAACTACCAGGAGATTACGCTAGATAAAAACGCGTATATTTTGGACAACGGGACGATCGTGCAGCCGCAGGAGGATTCAGATAATGTGATTATATACGTTCTGGATCAAACGTATTAA
- Protein Sequence
- MEAQFITMVQEALTPECCLICGKNHDIRYCDYVKIEKHVPDTPIPSRARLTLPSFLEVQMLSDGAYFIITKNPISKGTKFGPFQAEKSENLEPKVSFPLKLFESNGNKSCEYYLDTNNEERCSWLMFVGAAEFAEEQNLICYQEKEHIYYVAIKNIPEGGVLKVWYSPHYALKMNKTLLPPKPIEVPLIDVNSLIKKQQKIMERKVWTCKFCSHMEHNIVSFARHILKHYTAQHKNMCEICKKTFGSKRNLKNHMKIVHQVFLSTSPPKLAKATVTVQPRCKDVALGGPLLNDMFTDSSDLNQLDLNLDNQNLLLDNDNLTVENLLNDNVKDLDHFNFEIDDSQKQFVCDICLKQFTKAKLLIIHLRHHTGDFVCYKCLKVFCRKENLKSHVCNISNQFRCSMCDKVFTQKKYLSRHLQAIHNKKFHCVSCNKSYHSNKELSEHNCSKVPDMEKEKFVCPICSKHFYRDIYLKRHLRTHGPRSKSSKRSTTCEVCGLHLTSKTSYFSHRKIHEEPTFSCEICDKKFKRADILKEHIACHQEPHQFECHICRKTLKSKKILNTHLKQHNSLYSIKCPICEVVFKRRNSLNTHMRNYHERKKSTTFEFYTCPVCNKSIKLKSSLHRHLKRVHSDLNKIDLSSITPKITRNKKKESLQTEVDDQISSLLTSAENNAAIEKHAVDSLVEELDIERKKSEKEVCLSIPELTENYQEITLDKNAYILDNGTIVQPQEDSDNVIIYVLDQTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415372;
- 90% Identity
- -
- 80% Identity
- -