Basic Information

Insect: Cynaeus angustus
Gene Symbol: Prdm4
Assembly: GCA_030157275.1
Location: CM058060.1:28217272-28220098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.5e-06 0.00012 22.6 1.2 3 23 239 260 238 260 0.96

2 11 0.00016 0.013 16.2 1.2 1 23 352 374 352 374 0.98

3 11 0.0022 0.18 12.6 5.5 1 21 378 398 378 399 0.95

4 11 3.4e-06 0.00028 21.5 0.6 2 23 405 427 405 427 0.94

5 11 2.5 2e+02 3.1 5.3 1 19 431 449 431 451 0.94

6 11 4.4e-06 0.00036 21.1 4.1 1 23 462 484 462 484 0.98

7 11 0.039 3.1 8.7 0.6 2 23 496 517 495 517 0.97

8 11 0.00024 0.019 15.7 0.3 1 23 522 544 522 544 0.97

9 11 0.025 2.1 9.3 1.5 1 23 549 571 549 571 0.97

10 11 6.6e-07 5.4e-05 23.7 0.5 2 23 578 600 577 600 0.96

11 11 1.9e-05 0.0015 19.2 0.6 1 23 610 633 610 633 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.5e-06	0.00012	22.6	1.2	3	23	239	260	238	260	0.96
2	11	0.00016	0.013	16.2	1.2	1	23	352	374	352	374	0.98
3	11	0.0022	0.18	12.6	5.5	1	21	378	398	378	399	0.95
4	11	3.4e-06	0.00028	21.5	0.6	2	23	405	427	405	427	0.94
5	11	2.5	2e+02	3.1	5.3	1	19	431	449	431	451	0.94
6	11	4.4e-06	0.00036	21.1	4.1	1	23	462	484	462	484	0.98
7	11	0.039	3.1	8.7	0.6	2	23	496	517	495	517	0.97
8	11	0.00024	0.019	15.7	0.3	1	23	522	544	522	544	0.97
9	11	0.025	2.1	9.3	1.5	1	23	549	571	549	571	0.97
10	11	6.6e-07	5.4e-05	23.7	0.5	2	23	578	600	577	600	0.96
11	11	1.9e-05	0.0015	19.2	0.6	1	23	610	633	610	633	0.98

Sequence Information

Coding Sequence: ATGGAGGCCCAGTTTATTACGATGGTGCAAGAAGCTCTAAAGCCCGAGTGCTGCCTTATCTGTGGAAAGAACCACAACGTACAATACTGTGATTacgtaaaaattgaaaaacatGTACCTGATACTCCGATACCGTCACGAGCTAGACTCACTCTGCCCGGTTTTCTGGAGGTGCAAATGTTGAGTGATGGTTCTTATTTTACTACGACTAGAGCTTTTATCAGTAAAGGGACGAAGTTCGGGCCTTTTCAGGCCGAAAAAACCGAGAGTTTAGAGCCCACGGTTTCGTTTCCGTTGAAAGTGTTGGGGGGCGATGACAAAGAGAGCGAGCGTTATTTAGATAGTAATAATGAAGAGAGATGCAACTGGTTGATGTTTGTGGGGGCTGCTGAGTATGTTGAAGAGCAAAATCTGATTTGTTATCAggaaaaagaaaacatctaCTATGCGTCCTTAAAAGATGTAAACGAGGGCGACGTCCTCAAAGTCTGGTACTCCCCGCACTACGCCTCCAAGATGAACAAACCGCTCTTGCTCCCGAAACCCGCGGAGAACCCTTCAAAAGACATCGACGTCAACAGCCtcatcaaaaaacaacaaaaaatcatgGAACGCAAAGTCTGGACGTGCAAGTTTTGCAGCCACATCGAAAACAACATCGTCTCTTTTGCAAGACACATCCTCAAACATTACACCGCTCAACAGAAGAACATGTGCGAGATCTGCAAGAAGACTTTCGGATCGAAAAGAaacttaaaaaaccaCATGAAAATCGTCCATAAAGTGCACCTGTCAGCGTCCCCACCAAAACCGGTGAAGGCCATTGTGAGTGCTCCACGGTGCAAAGACATGGCGCTCGGAGGTCCTCTTTTGAACGACATGTTCACTGATAGCTCCGATCTACAACAGTCAGATCTCAATCAATTTGATCTCAGTTTAGATAATCAGAATTTGTTGTTGGATAATGACAGTTTAACCGTGGAGAATCTCCTCAACGACAACGTGAAAGATTTGGATCATTTTAACTTCGAAATTGATGACAGTCAGAAGCAGTTTGTGTGTGATATTTGTCTCAAGCAGTTCACCAAAGCCAAGTTGTTGATCATCCACCTGAGACACCACACGGGGGATTTTATTTGCTACAAATGTTTGAAGATTTTCTGTCGCAAAGAGAACCTGAAATCCCACATGTGTAATGTAAGCAGCCAGGCTCGATGCCCTCTGTGTGACAAGGCGTTCACTCAGAAGAAGTACCTCTCGCGACATCTCCAGGCTGTCCACAATAAAAAGTACCACTGTGTGTCCTGCAATAAGAGCTACCATTCCAACAAGGAACTATCTGAGCACAACTGTTGCAAAGTCCCCGACGCcgacaaagaaaaattcatcTGCCCCATCTGCAACAAGCACTTCTATAGAGATCGCTACCTGAAAAGACACCTACGCACGCACGGCCCATGCACCAAAGCCTCGAAACGCTCGACAACTTGCGAAGTCTGCGGACTGTATCTAGCAACCAAAACCTCTTATTTTTCTCATAAGAAAATCCACGAAGAAGCGGCGTTTCCGTGCGAAGTTTGCGACAAGAAGTTCAAGCGTTTGGATATCTTGAAGGAGCACGTTTTGAGCCACCAGGACCTGCAGTATGAATGCGAGGTTTGTCGGAAGAAGCTGAAAAGTAAGAAGATATTGAACACCCATGTCAAACAACACAATTCTTTGTATTCAATCAAGTGCCCCATCTGTGATCTCGTGTTTAAAAGGCGCTCAAGTCTCAACACCCACGTTAGGAACTACCACGAGCGGAAAAAGAACACGTTCGAATACTACAGTTGTCCAGTCTGCAACAAATCCATCAAGTTGAAGAGCTCCCTTCTTCGACATCTTAAGAGAGTGCACGCGGACATGACAAACATCGATCTGAGTAGGCTCACTCCTAAAGttgctaaaaataagaaaaaagagaGTCTTCAGAACGATTTGGAAGACCAGATCAGTTGTTTGTTGAACAGTGCGGAAAACAACTCGGCGATCGAGAAACACGCCGTTGATAGCTTAGTAGAGGAGTTGGATATAGGGAGAAAAAAGAGTGAAAAAGAAGTGTGTTTGTCCATTCCGGAACTCTCGGAGAACTACCAGGAGATTACCTTAGataaaaacgcGTACATTTTGGACAACGGGACGATCGTGCAACCGCAGGAGGATTCGGACAATGTGATTATATACGTTCTGGACCAAACGTATTAA
Protein Sequence: MEAQFITMVQEALKPECCLICGKNHNVQYCDYVKIEKHVPDTPIPSRARLTLPGFLEVQMLSDGSYFTTTRAFISKGTKFGPFQAEKTESLEPTVSFPLKVLGGDDKESERYLDSNNEERCNWLMFVGAAEYVEEQNLICYQEKENIYYASLKDVNEGDVLKVWYSPHYASKMNKPLLLPKPAENPSKDIDVNSLIKKQQKIMERKVWTCKFCSHIENNIVSFARHILKHYTAQQKNMCEICKKTFGSKRNLKNHMKIVHKVHLSASPPKPVKAIVSAPRCKDMALGGPLLNDMFTDSSDLQQSDLNQFDLSLDNQNLLLDNDSLTVENLLNDNVKDLDHFNFEIDDSQKQFVCDICLKQFTKAKLLIIHLRHHTGDFICYKCLKIFCRKENLKSHMCNVSSQARCPLCDKAFTQKKYLSRHLQAVHNKKYHCVSCNKSYHSNKELSEHNCCKVPDADKEKFICPICNKHFYRDRYLKRHLRTHGPCTKASKRSTTCEVCGLYLATKTSYFSHKKIHEEAAFPCEVCDKKFKRLDILKEHVLSHQDLQYECEVCRKKLKSKKILNTHVKQHNSLYSIKCPICDLVFKRRSSLNTHVRNYHERKKNTFEYYSCPVCNKSIKLKSSLLRHLKRVHADMTNIDLSRLTPKVAKNKKKESLQNDLEDQISCLLNSAENNSAIEKHAVDSLVEELDIGRKKSEKEVCLSIPELSENYQEITLDKNAYILDNGTIVQPQEDSDNVIIYVLDQTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00753275;
90% Identity: -
80% Identity: -