Gcor008216.1
Basic Information
- Insect
- Gnatocerus cornutus
- Gene Symbol
- -
- Assembly
- GCA_029298725.1
- Location
- CM055512.1:21024160-21025679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 0.89 10.5 1.7 1 23 143 164 143 164 0.96 2 11 0.014 1.1 10.2 0.3 1 23 204 225 204 225 0.93 3 11 3.1e-05 0.0025 18.5 4.3 1 23 231 253 231 253 0.97 4 11 0.011 0.9 10.5 2.5 1 23 259 281 259 281 0.96 5 11 4.1e-05 0.0033 18.2 4.9 1 23 288 310 288 310 0.97 6 11 0.00067 0.053 14.3 7.9 1 21 323 343 323 344 0.93 7 11 1.4e-05 0.0011 19.6 3.5 1 23 354 377 354 377 0.97 8 11 3.1 2.5e+02 2.8 1.1 3 23 386 403 385 403 0.72 9 11 1.7e-06 0.00014 22.5 0.9 1 23 409 431 409 431 0.98 10 11 4.9e-06 0.00039 21.1 0.1 1 23 437 459 437 459 0.98 11 11 1.5e-05 0.0012 19.5 1.2 1 23 465 487 465 487 0.97
Sequence Information
- Coding Sequence
- ATGAACCTCATTAAAGCAACAGTGAGCAAAGAAAACCTCCAGAAACTCTGCAGAATCTGTCTGGAAGAAAAACCGATCGTTTTCGACACCCGTCTAAGCATCGAATTCGAAACGAACCTCCTCGTAAACATCACCGAAATGCTGAACAAAGTCACGTCTCGTTCGGACACGGAGGAGCAGTCCAAACCGAAGCTCATCTGCAACGAGTGTCTCGGGGACCTAAAAACCGCGTATCTCTTAGTGTTGAAGTTCGAGGAAGCCGACCGGATCCTCCAGGAGTTCCTCGCGAACTTCGTCAAGAAGGAGGAGGTGGAGAGCGATGACGAGCGCGTGGAGGTGGAGACCCGCACCCTCCGCCGCACCAAGAAGCGCGTCCGCAAGAAAAAAGCCCCCGAGGAAGAGGCGGACTTCTCCAAGAGCCGCCTGCACTCTTGCCCCATTTGCACGAAAGACTTCACGGCGTTGGAGTTGCGCGATCACGCGCACACGCACAAAGCCCTGAAGAAGTACCTCAGTATTGGGCAGAAGGTGACCCCCACGACGAAGTTCTACACGCGAAGACACCTCACGGAGCCCCAGGAGTCGATTTTCAACCGCCTGGTGAAGCTGCACAAGTGTCCGTATTGCAACGAGGAGTTCCCGGTGGAGGAGTTCCGCGTGCATATCGACATCCACCGGCAACAGAGCGAGTATAAATGCGACAAGTGCGAGCGAGTGTTCAAACGACTGAACCACTTGAACACTCATCGCGTGAAGCACCTCAAAGAGTTCCCGTATAAATGCGAGCAGTGCGATAAAGGCTTCGTTATCAAGAAGAACTACGATTGTCACATTCTCACCCACACCAACGACGAGTTGCCTCACGAGTGTCGTTTCTGCTTTAAAAGGTTCTCGAATCCGGAGCACCTCAACCGCCACCAGATCATCCACACTGAGAATGTGACGTACTCGGTGAAGTACCGCGTCTGCAAGTGTCACCACTGCCTCAAAAGCTTCAAGAACAAAGACGAGCTGAAAGCCCACACTTGCGTCCCAGTGGAGCAAACTGTCGGCACTAGATTCCCCTGTAAGACATGCAAGAAGGTCTTCAAGCACTCCAGCGGGCTGTACAACCACACGCGCAACATTCATAAACTGAAAGGTGTGAAGATTCTGTGCTCGGTGTGCGGGAAGTACGTTTCGAATATTTATAATCACATGATGAGGCACACGGGGGAGAAGCCCTATCAGTGTAACCAGTGCGAGAAGAGGTTCATTTCGAAGCCGCAACTCAAACAGCATTTGTTGGTGCATTCGGGGCTGAAACCGTACGTTTGTAGTGTGTGCGCGAAGGCGTTTAACAATTTGTATAATTTGCAAGTTCACGAGAGGATACATGTGGGGGATCGGTGTCATATTTGTCCGAATTGCGGCAAGGGGTTCTTGGAGAAGTCGTATTTAAAGAAGCATATGAACGTGCATGCGAAACAGTGA
- Protein Sequence
- MNLIKATVSKENLQKLCRICLEEKPIVFDTRLSIEFETNLLVNITEMLNKVTSRSDTEEQSKPKLICNECLGDLKTAYLLVLKFEEADRILQEFLANFVKKEEVESDDERVEVETRTLRRTKKRVRKKKAPEEEADFSKSRLHSCPICTKDFTALELRDHAHTHKALKKYLSIGQKVTPTTKFYTRRHLTEPQESIFNRLVKLHKCPYCNEEFPVEEFRVHIDIHRQQSEYKCDKCERVFKRLNHLNTHRVKHLKEFPYKCEQCDKGFVIKKNYDCHILTHTNDELPHECRFCFKRFSNPEHLNRHQIIHTENVTYSVKYRVCKCHHCLKSFKNKDELKAHTCVPVEQTVGTRFPCKTCKKVFKHSSGLYNHTRNIHKLKGVKILCSVCGKYVSNIYNHMMRHTGEKPYQCNQCEKRFISKPQLKQHLLVHSGLKPYVCSVCAKAFNNLYNLQVHERIHVGDRCHICPNCGKGFLEKSYLKKHMNVHAKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00415364;
- 90% Identity
- iTF_00415364;
- 80% Identity
- -