Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: L
Assembly: GCA_029298725.1
Location: CM055518.1:5921104-5926613[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7.3e-05 0.0058 17.4 1.1 1 23 77 99 77 99 0.98

2 19 0.11 8.9 7.3 4.8 1 23 105 127 105 127 0.97

3 19 1.1e-06 9.1e-05 23.1 3.2 1 23 133 155 133 155 0.99

4 19 0.00017 0.013 16.2 0.3 1 23 161 183 161 183 0.99

5 19 5.7e-05 0.0045 17.7 0.8 1 23 205 228 205 228 0.95

6 19 0.019 1.5 9.7 0.1 2 23 255 277 254 277 0.95

7 19 0.012 0.97 10.4 0.3 1 23 311 334 311 334 0.96

8 19 0.016 1.3 10.0 0.0 3 23 438 458 437 458 0.97

9 19 0.00082 0.065 14.1 2.4 3 23 468 489 466 489 0.91

10 19 0.21 17 6.5 0.7 1 23 494 517 494 517 0.94

11 19 0.0009 0.072 13.9 4.6 1 23 582 605 582 605 0.97

12 19 5.5e-05 0.0044 17.8 2.6 2 23 684 705 683 705 0.97

13 19 0.0035 0.28 12.1 0.9 1 23 714 736 714 736 0.98

14 19 0.46 37 5.4 1.1 3 23 745 765 744 765 0.95

15 19 0.96 76 4.4 0.9 3 14 813 824 811 826 0.90

16 19 0.84 66 4.6 0.1 2 23 868 889 867 889 0.89

17 19 0.0032 0.25 12.2 0.3 2 23 898 919 897 919 0.95

18 19 0.0066 0.52 11.2 0.0 1 23 927 949 927 949 0.96

19 19 0.032 2.6 9.0 1.6 1 23 956 978 956 978 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7.3e-05	0.0058	17.4	1.1	1	23	77	99	77	99	0.98
2	19	0.11	8.9	7.3	4.8	1	23	105	127	105	127	0.97
3	19	1.1e-06	9.1e-05	23.1	3.2	1	23	133	155	133	155	0.99
4	19	0.00017	0.013	16.2	0.3	1	23	161	183	161	183	0.99
5	19	5.7e-05	0.0045	17.7	0.8	1	23	205	228	205	228	0.95
6	19	0.019	1.5	9.7	0.1	2	23	255	277	254	277	0.95
7	19	0.012	0.97	10.4	0.3	1	23	311	334	311	334	0.96
8	19	0.016	1.3	10.0	0.0	3	23	438	458	437	458	0.97
9	19	0.00082	0.065	14.1	2.4	3	23	468	489	466	489	0.91
10	19	0.21	17	6.5	0.7	1	23	494	517	494	517	0.94
11	19	0.0009	0.072	13.9	4.6	1	23	582	605	582	605	0.97
12	19	5.5e-05	0.0044	17.8	2.6	2	23	684	705	683	705	0.97
13	19	0.0035	0.28	12.1	0.9	1	23	714	736	714	736	0.98
14	19	0.46	37	5.4	1.1	3	23	745	765	744	765	0.95
15	19	0.96	76	4.4	0.9	3	14	813	824	811	826	0.90
16	19	0.84	66	4.6	0.1	2	23	868	889	867	889	0.89
17	19	0.0032	0.25	12.2	0.3	2	23	898	919	897	919	0.95
18	19	0.0066	0.52	11.2	0.0	1	23	927	949	927	949	0.96
19	19	0.032	2.6	9.0	1.6	1	23	956	978	956	978	0.97

Sequence Information

Coding Sequence: ATGAAAATGCTATTTAAAGGAAATAGTAGTCGGCTAGAATTATTGATTGAAAAAATCCAATCCACCAAAGAAAACGGAGAATTTAAAGTTCCagTAGCTGACGATGAAAATGCCGCCAGTTCCGCGTCCGGATCTGGATGTGGCGAAACCGTTCAAGGATTTGAAGATCTCGTCCAAGGACCCAAAGAAATAGCACATGAAGAAGATCAAGATACGAAACCAGGGCCCTATAAATGCACCGTTTGCGGAGAAAAGTATTCAAAAGAGAAACAACTAAGAGAACATGAACAGAGTCACACGGATCATCTGCAATTCACATGCGCATATTGTCCTAGACTTTTCAAACACAAACGGTCAAGAGATCGTCATACGAAGCTCCACACAGGAGATAAAAAATACAAGTGTCAACAGTGCGATTCGGCTTTTTCACGAAGTGATCACCTGAAAATTCATATGAAAACACATGATAGTCGTAAACCATATAAATGTGGTACATGCAATAGGGGATATAACACCGCCGCCGCTCTCTCCTCCCATCAGCAAAGTCACTTGAAGCAAGAATCTAGATCCGGAAGCCGGACCAGCGGAGGAAGTACACCCAGTCCCGGACTTTTCCGGTGCAATCACTGCACAGAAACTTTCGGAAAAGCGGATCTCTTGCAGAATCATATGGCCTTGATTCATAGCGACACTGATTCGTCCTTAAGCCAAACTCCCGAACCTTTGTCAGAGTATCAAAACCAAGTTGAAGATTTGAAGATAGTTTGTATGTACTGTTCTAAAGAATTTCCCAGTTTAGACTTGATGTACCAACATACAAACATTGCTCATCGCGACGTCCCAAACGGTGTTTCAACCTCAATTTCACTTCCATCTCCTGTAACTCAAACCTCTCCTAAACAAGAAGTTTGCCAAAACGGAACACCGACCTACGCCTGTGATAAATGTACCATGCAGTTAGATTCGTTACAAAACTTGAAGAACCACATAAACAACGTTCATTGGCGACCAACTTTATCACCAAACCCAATGAAAGATTATAGTAATTTGATTGGAATTGATAAAAGTTACTCTCCTTTCCAAATACAACCGACTGATTTAAGTCGGAAAAAGAAGAATGAAGACAACTTAgaaaaaatgatcaaaaaaaAGAAACCGGACCACCAACATTCGCCTACTGTAAGTCCGTACGACTCCAACGACAAACCGTGTATTTGTTCGTGTTGCTACGCCCAGTTACcaaattttaagagttttctTCATCACATGGAATCGCATGTGATATCTTCAAATAATTCGCTGTTGGGATTTTGTCCAGTTTGTGGAGAGCCTGGTCGCGATCCCATTTCGTTCACTAATCACATCTTCAGCCACGCGATCGCTCAAGTTCCTGGTCGCTGCTGTTATACTTGCAAAAAATCCTTTGAAAGACTAGAAGAACTGCAAAAACATCTCTTGGAAGTTCACGTGGTTTCGGTTTTCAAATGTTTGATTTGTAACGACATCTTTGATACGAAAATATCGATGCAGCTCCATTTAACAAATAAACACAACGATGAGTGCAAGCATTTTAAGTGTTATCTATGTACGAATCAAGTTTTCCACGACAGATTATCCGCggaacttcatatttcgatgaagCATTACCAGCAATTCACGCCTTGTGTCGGCAGTAATCAGTCGCTGCTGAGGAGTCAGTACCAAACAGATCTCGATGCGAGGTTCAGAGAGTACAATCTGGTGTTTCAATGCACGTTTTGCCACAAGACGTTCAAGGATCAATACTCGCAGTATATTCACATCCTGAAGGAGCACAACGAAGCCAAAGAAGGTGAGAAACTCATTTTGGATTCGACAATGGGCCACACTCCGTCCAGATCTCCCAATTTCATGTTTCCGAAAATTGTGACTCCGGACCATGTGGATACGACCATGGAAACTGCATACACTTGTGATATATGTAATCGCAACGACATAGCATCGGAAGCTGACTTGATAAGTCACAAGAAAGTCCATCATAGTAAGAACAAAATCGGACCTGTGAGTCTCCAGTGTGCTTATTGTAACGAGTATTGTAAATCAAGAAGTGATTTGGAAAACCACATGAAAACCCATCAAGTGACTTGTGGTAAAGGGAAACATAAATGTAATATCTGCGATGAAATTTATTCTTCAACTCTCACCTTAGCAGACCACAAACTAACTCACTGCAAGATTGTTGAAGGAAACAGTTGCGTACAATGTAAAACAACTTTGAGTGACGAACAATCGTTTTATAATCATCAACTGCAACATACTAACAATCCGACGAAACCAAATTCGCAGATTTCTCTACCGGCGAATTGTATAATTTGCTGTCAAACTTTACAAACTGATGTGGAAATTAAACTACATGCAAAATTTCATCTGAAACATTTAACACAGAAAGAGTGCTTGTGTGGGGTGTGTAACAAAGTCTTCGACAGTCAGAGTGGTCAGGTCGTGAATAATTTCGAAAACTCATCGGACAACATTAGCATATTTTTGTGTAAAGACTGTAGCACCAAAAATAACGGAACTAATAATTCCGATGTAAAAAAATTGTCTCCCGGAAAACAATTTGCTTGTATTCAGTGTCCACAAACTTTTGATAGTGAAAATGACGTTCAAAGCCACGCAACGATGCACATGTTGAATGAAGGAACAAATTTAGAATGTAGACTGTGTAAGCAAGTTTTTTCGTCTCCGCTAAAGCTACAGACGCATTTAATAGAACATAATTTCTATGGAATGAATCAATATAGCTGTTATGTATGTTCTTCAGTTTTTACAGCAGCAAGTGGTCTACAGAACCATATTATAGGTCATGGTTTAGACAGTAGACCTTATGAATGTTCACAATGCcaaatgaaatttttctttaGGGCAGAATTGGACAATCATAGATTTGTTCACATTCTTCACACGCCAACGAATTCTCAAAAGTCTCCATATTCAGTACCAAACGGCGTGGAAATGATATACGAAAATAAAGCAAGTCCGCgatataaaatttgtaaatactGTTCGAATTCTTATTTGGACAACACGTTTTTCTTAGAACATCTAAACCAATGCCCTTTCAAAATAAGTCCAAAACGCGAAAACTTTGACACTACGAATGATGTAGACAATAATATAAAGCAAGAGGTAACAGAAATCACGTCAGAGGTCGTTATTGAAAAAGATGAGCAATAA
Protein Sequence: MKMLFKGNSSRLELLIEKIQSTKENGEFKVPVADDENAASSASGSGCGETVQGFEDLVQGPKEIAHEEDQDTKPGPYKCTVCGEKYSKEKQLREHEQSHTDHLQFTCAYCPRLFKHKRSRDRHTKLHTGDKKYKCQQCDSAFSRSDHLKIHMKTHDSRKPYKCGTCNRGYNTAAALSSHQQSHLKQESRSGSRTSGGSTPSPGLFRCNHCTETFGKADLLQNHMALIHSDTDSSLSQTPEPLSEYQNQVEDLKIVCMYCSKEFPSLDLMYQHTNIAHRDVPNGVSTSISLPSPVTQTSPKQEVCQNGTPTYACDKCTMQLDSLQNLKNHINNVHWRPTLSPNPMKDYSNLIGIDKSYSPFQIQPTDLSRKKKNEDNLEKMIKKKKPDHQHSPTVSPYDSNDKPCICSCCYAQLPNFKSFLHHMESHVISSNNSLLGFCPVCGEPGRDPISFTNHIFSHAIAQVPGRCCYTCKKSFERLEELQKHLLEVHVVSVFKCLICNDIFDTKISMQLHLTNKHNDECKHFKCYLCTNQVFHDRLSAELHISMKHYQQFTPCVGSNQSLLRSQYQTDLDARFREYNLVFQCTFCHKTFKDQYSQYIHILKEHNEAKEGEKLILDSTMGHTPSRSPNFMFPKIVTPDHVDTTMETAYTCDICNRNDIASEADLISHKKVHHSKNKIGPVSLQCAYCNEYCKSRSDLENHMKTHQVTCGKGKHKCNICDEIYSSTLTLADHKLTHCKIVEGNSCVQCKTTLSDEQSFYNHQLQHTNNPTKPNSQISLPANCIICCQTLQTDVEIKLHAKFHLKHLTQKECLCGVCNKVFDSQSGQVVNNFENSSDNISIFLCKDCSTKNNGTNNSDVKKLSPGKQFACIQCPQTFDSENDVQSHATMHMLNEGTNLECRLCKQVFSSPLKLQTHLIEHNFYGMNQYSCYVCSSVFTAASGLQNHIIGHGLDSRPYECSQCQMKFFFRAELDNHRFVHILHTPTNSQKSPYSVPNGVEMIYENKASPRYKICKYCSNSYLDNTFFLEHLNQCPFKISPKRENFDTTNDVDNNIKQEVTEITSEVVIEKDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01568303;
90% Identity: iTF_01568303;
80% Identity: -