Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: -
Assembly: GCA_029298725.1
Location: CM055511.1:12591002-12593051[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.9 1.5e+02 3.5 0.9 3 23 158 179 156 179 0.89

2 13 0.0014 0.11 13.3 6.0 1 21 209 229 209 231 0.95

3 13 0.0021 0.17 12.8 5.6 1 23 237 259 237 259 0.98

4 13 3.7e-05 0.0029 18.3 0.5 1 23 265 287 265 288 0.96

5 13 8.9 7.1e+02 1.4 1.8 3 21 311 326 310 329 0.68

6 13 0.0014 0.11 13.3 4.1 3 23 344 364 343 364 0.99

7 13 0.00096 0.076 13.9 5.3 1 23 370 392 370 392 0.99

8 13 1e-06 8.1e-05 23.2 0.8 1 23 398 420 398 420 0.98

9 13 1.4e-05 0.0011 19.7 2.8 1 23 425 447 425 447 0.99

10 13 3e-06 0.00024 21.7 2.3 1 23 453 475 453 475 0.99

11 13 1.8e-06 0.00015 22.4 2.3 1 23 481 503 481 503 0.98

12 13 5.9e-05 0.0047 17.7 4.7 1 23 509 531 509 531 0.98

13 13 0.31 25 5.9 0.8 1 20 542 561 542 565 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.9	1.5e+02	3.5	0.9	3	23	158	179	156	179	0.89
2	13	0.0014	0.11	13.3	6.0	1	21	209	229	209	231	0.95
3	13	0.0021	0.17	12.8	5.6	1	23	237	259	237	259	0.98
4	13	3.7e-05	0.0029	18.3	0.5	1	23	265	287	265	288	0.96
5	13	8.9	7.1e+02	1.4	1.8	3	21	311	326	310	329	0.68
6	13	0.0014	0.11	13.3	4.1	3	23	344	364	343	364	0.99
7	13	0.00096	0.076	13.9	5.3	1	23	370	392	370	392	0.99
8	13	1e-06	8.1e-05	23.2	0.8	1	23	398	420	398	420	0.98
9	13	1.4e-05	0.0011	19.7	2.8	1	23	425	447	425	447	0.99
10	13	3e-06	0.00024	21.7	2.3	1	23	453	475	453	475	0.99
11	13	1.8e-06	0.00015	22.4	2.3	1	23	481	503	481	503	0.98
12	13	5.9e-05	0.0047	17.7	4.7	1	23	509	531	509	531	0.98
13	13	0.31	25	5.9	0.8	1	20	542	561	542	565	0.87

Sequence Information

Coding Sequence: ATGGAGCCCCCCGACGCCGCCGAGGTGCGCCTCAGCGACGTCTGCCGCGCCTGTTTGATGAAAACACACGATATGTCGAATTTCGCTCCAAAAACCGATCAAACTTCCGAAATAATCGCAATGTTGGCATCGGTCGGCaacattgagATCGAAATAAACGAGTTTTTACCGTCTTATCTCTGTAAGCCATGCGAAGAAAAGTTAAGGTTATCTTACGACTTTCAGTTGTTAATTCAAAGATCAAACGAAATCATTCGAGAGTGTATGAATGGGGGCGATATGGTTTCAGAGGAGGCTCCCGAGGACGATAAGTCCAACATTGAAGATATTCCCGAGATTAAAGTTGAAGAGACTCTCCTTATTGTTAATCCAGTTATAAGAAGAGCCTCAAAGACCGTGGAGCAGTTTTCTGCCGAAGAAGTCGAAGAAGCGATTCGCGAGCACCAGGAGAAGTACACCACCAACACAGAGTGTATAAAATGTGGCTTCCTCACAAGTCACATAAAGGCGCTCTCCGCTCACATGTCGCGCCTCCACAAGGACATCAAAGACCGCTGGTGCGCCGTCTGCAACATTGAAGTCGACAACTTACCCGAGCACACCGCGGCCCATGTAGAGACCCACTTTAAATGTAAATTCTGCGGAAAAAGATTCTCATCAGGGGGGCACCTGTACGAGCACTTACGCTGCCACTCTAACGTGAAGCCCCACACGTGCTTTATATGTCACCGGGGCTTCATCGCGTACAGACACCTCGAAAAACACCTGAGGGTGCACATGAACAATCGCTTATACAAATGTTCGTTGTGCCCCGCGAACTTTGCAGGGCGCAGCGCCCTGAAAGCCCACCTTCAACGACACCACTCTCCGGTTAAAAACGAAGAAAACTGTGAAGTTCCCGCATTAAAACTAAGTCACCCCCAGAACTTCTGCAAGGTTTGTAAGAAGCGCGTGCGGAGTTTAGAGAAACACACTGAGCGCTTTCACGACCCTGCCGGGGCCCCCACTAAGAAGACGGAGGGTATTCTATGTCCTCAGTGCGGAAAAAAATTCAGTTGTTTGTCTCGGTTTCGTCTCCACATGCGGACCCACACCGGGGAAGCCCCCTACAAATGTCAATTCTGTGATAAACGCATGACGAATCGTAACCACCTAACAATGCACGAGCGGACCCACACCGGGGAAAAACCTCACGTTTGTACAATCTGTGGCCGGGGTTTTTCTCAAACCAGTGTTCTGAACACGCACATGCGTATCCACACCGGGCGCCCCTACAAGTGTGATATTTGCGCGAAACGGTTTTGTAGAGTTGCGCAGTTGAGATTGCACCTGCGCAAACATACCGGGGAAAAACCGTATCAATGTGACCTGTGTGAACAAGCCTTTAAACAAGCGAGCCATTTGACAGAACACAGGAAGCGTCATAGCAGCGAGCGTCCCTACAAATGTTCCCAATGCGAGAAGAGCTTTAAGCAGTTATCGACTTTAAAATCGCACCTCACGATACATACAGGGGAAAAACCGTTCAAGTGTAGTCAGTGTCCGTACGCGTGTCGGCAAAGGTACAGTCTAACGCAACATATGAAACAACATAGTGTGGACGCCCCTGACCCTGAGAAGCCTCATTTTTGTAGGTTATGTCAAAAGGGGTACAATACCATGGCTATGTTGATGTCGCATAACGATCTAGTGCACAGTGCGTTTAACATAATAGTCACTTGA
Protein Sequence: MEPPDAAEVRLSDVCRACLMKTHDMSNFAPKTDQTSEIIAMLASVGNIEIEINEFLPSYLCKPCEEKLRLSYDFQLLIQRSNEIIRECMNGGDMVSEEAPEDDKSNIEDIPEIKVEETLLIVNPVIRRASKTVEQFSAEEVEEAIREHQEKYTTNTECIKCGFLTSHIKALSAHMSRLHKDIKDRWCAVCNIEVDNLPEHTAAHVETHFKCKFCGKRFSSGGHLYEHLRCHSNVKPHTCFICHRGFIAYRHLEKHLRVHMNNRLYKCSLCPANFAGRSALKAHLQRHHSPVKNEENCEVPALKLSHPQNFCKVCKKRVRSLEKHTERFHDPAGAPTKKTEGILCPQCGKKFSCLSRFRLHMRTHTGEAPYKCQFCDKRMTNRNHLTMHERTHTGEKPHVCTICGRGFSQTSVLNTHMRIHTGRPYKCDICAKRFCRVAQLRLHLRKHTGEKPYQCDLCEQAFKQASHLTEHRKRHSSERPYKCSQCEKSFKQLSTLKSHLTIHTGEKPFKCSQCPYACRQRYSLTQHMKQHSVDAPDPEKPHFCRLCQKGYNTMAMLMSHNDLVHSAFNIIVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415353;
90% Identity: iTF_00415353;
80% Identity: -