Basic Information

Insect: Gnatocerus cornutus
Gene Symbol: su(Hw)
Assembly: GCA_029298725.1
Location: CM055509.1:34956176-34960483[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.6e-05 0.0029 18.3 2.1 1 23 149 172 149 172 0.96

2 13 6.6e-05 0.0052 17.5 1.0 1 23 203 226 203 226 0.96

3 13 2.6e-05 0.0021 18.8 2.2 1 23 232 254 232 254 0.99

4 13 1.2e-05 0.00093 19.9 0.4 2 20 261 279 260 281 0.94

5 13 9.6e-07 7.6e-05 23.3 1.3 1 23 292 314 292 314 0.98

6 13 2.5e-05 0.002 18.8 0.9 1 23 324 346 324 346 0.98

7 13 8.4e-06 0.00066 20.3 0.4 1 23 352 374 352 374 0.98

8 13 1.6e-05 0.0013 19.5 2.3 1 23 380 402 380 402 0.98

9 13 1.1e-05 0.00086 20.0 3.5 1 23 408 430 408 430 0.95

10 13 5.3e-05 0.0042 17.8 3.4 1 23 436 459 436 459 0.97

11 13 3.2e-05 0.0026 18.5 1.5 2 23 466 487 465 487 0.96

12 13 6.5e-07 5.2e-05 23.8 1.5 1 23 493 515 493 515 0.98

13 13 1.3e-05 0.001 19.7 3.8 2 23 522 544 521 544 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.6e-05	0.0029	18.3	2.1	1	23	149	172	149	172	0.96
2	13	6.6e-05	0.0052	17.5	1.0	1	23	203	226	203	226	0.96
3	13	2.6e-05	0.0021	18.8	2.2	1	23	232	254	232	254	0.99
4	13	1.2e-05	0.00093	19.9	0.4	2	20	261	279	260	281	0.94
5	13	9.6e-07	7.6e-05	23.3	1.3	1	23	292	314	292	314	0.98
6	13	2.5e-05	0.002	18.8	0.9	1	23	324	346	324	346	0.98
7	13	8.4e-06	0.00066	20.3	0.4	1	23	352	374	352	374	0.98
8	13	1.6e-05	0.0013	19.5	2.3	1	23	380	402	380	402	0.98
9	13	1.1e-05	0.00086	20.0	3.5	1	23	408	430	408	430	0.95
10	13	5.3e-05	0.0042	17.8	3.4	1	23	436	459	436	459	0.97
11	13	3.2e-05	0.0026	18.5	1.5	2	23	466	487	465	487	0.96
12	13	6.5e-07	5.2e-05	23.8	1.5	1	23	493	515	493	515	0.98
13	13	1.3e-05	0.001	19.7	3.8	2	23	522	544	521	544	0.94

Sequence Information

Coding Sequence: ATGGAGGAGGGTTTAAGTGTGAAGGTAGAGACCCCATCTCGCAAGAATGAAGAAACGATCGTCCTTCAAAACATCCCCATGGAAAATGAGGAAGAAATTCCCATAGTTTTCGGCGATTACATGGAGAACAACTCCGATGGGAACCTCCACGTTAATAGCGTCCAAGAGGATGTTATCCACACCTACATCATTGAGCAAGAAGAGTACAACAACATTGAATATGAAGAAACTACAGTTGTTGAGCAACAAGACACTGACGACGAAACAACTGACCTCAAGAGAGACGAGCAAAACGCTGATCTTGATGAGAGTTCAGCTGCTGAAGTTGAAGAGAACTCAATGGACTTTGACGAAGAGTATGTTGATGAAGTGGAACCTGAAGAGGACGATGTTGAGGATGATCAACCTGACTATGTGGATCCTCTGGAGTTTGAAGGGGGCGACTTTGAGTGCGATCTGTGTCATCGCAAATTCAAAACCACAGCTGGCTTGAAGAGACACATCACGGTTAACCACGCAGAAGAAGAAGACTTGAAGGACCCTCTGACTTTCCAGCTGTGCCCTTGCTGTGGGGAGCCCGTGGATTCAGCCCACACTATTGGCGACTTTAAATGCGAGAAATGTGACAAGCTCTTTGTCCAACAGAACAGTTTAGATCGGCATTACAGCATAGAGCACTGTGAAGGAGAAATCTTCAAATGCGTGGACTGCAGAAAGGATTTCAAACTGAAAGAGCACCTCATTGAACACATGAAAGTCCATCCTCTGTCTAAATGTATCAAATGCCCCGATTGCAGTAGGGAGTTTACCAGGAAATACCATTTAGATAGACACATTGCTCAGACTGGATGCAATGGGGCGCCCAGGAAACAATTTGTCTGCAAGGTGTGCAACAAAGTGTTTCATCGCAAAGACAACTTGGCGGATCATTTGAGGGCCCATGCAGGCCAAGGGAAGAGGAAGAAGGTCTTTATCTGCGAATACTGTCAGAAGGAGTTCCACGGTTCTGCTTTGCTCAACATTCATATTAGGACACACACAGgtgaAAAACCATACGCGTGTGATTTGTGTCCGAAGAAATTCCCCTCTAGTGGGGCAATGAAGAAACACAGAAGGATGCACACTGGGGAGAGGCCCTACGCCTGTAAAGAGTGTCACAACCGCTTCGCCGCCAAAGAGACCCTCAACCGCCACATGCGCACCCACACCGGAGAGAAGCCCCATTCATGCCAATTCTGCGGAAAATCCTTTATTCAAGCTTCCCAACTCCGCGCCCACATTTTCCACCACACTGGTGAGAACGCCTACACGTGCCCCCACTGCAACAGAGCATTTAACCGAAAACTCAGACTCACTACTCACATCAAATATATGCACGAGGGGGCCGAACCCATGTCGTGCTCCCAATGCGACAAGACCTTCTTCAGGAAGGAGGATTTGGCCCGACACTTCTTGTCACACACCGGCGAGAGACCCTTTGAATGCGACGTGTGTCACAAATCCTTCGCCGTGAAATCCTCGCTGAAGATCCACCAATTGACCCACCGCAAAGAGCCCCCGTGCAGCTGCGACACCTGCGGGCGCGCGTTTATCCGACAGGATTGCCTGATGCGGCACATGCGGGCTCGTCATCGAGACGTCCTCGAGGATATCATGGCGAGTGCTGAGAAGAAGAGGTTGCAACAGCAGTTGTTGAACGCGGCGACCGAAGCTGTCGCTAAGAATCAAGGGAGTTTGACTGAGAATATGGTCTGGAACGAACTGACTTTGACCGAATCCATTAAGGAGCTGTTGACGATTCTGGTGGACGAGGCGTGTTTGCAGGATTTCGGGTTCCCGGACGCTCCCGTTGATAAGATCCTGGACTCTGTTATCAAGCGGTGTGGACACAAACCGGCGTCGGAGGAGGATTTCGATTATATCGGGAGAATGCGCGAGAACGCCAAGTTGTTGTTTACTGTCGTCATTGATGATGAAGCTGTAAAGTCGCTGTTGAACAATCAGACGGTGGACGAGGTGATACTGCATGTTTTGAGGCTAGCAAAGGCCGAGAGTACTTAG
Protein Sequence: MEEGLSVKVETPSRKNEETIVLQNIPMENEEEIPIVFGDYMENNSDGNLHVNSVQEDVIHTYIIEQEEYNNIEYEETTVVEQQDTDDETTDLKRDEQNADLDESSAAEVEENSMDFDEEYVDEVEPEEDDVEDDQPDYVDPLEFEGGDFECDLCHRKFKTTAGLKRHITVNHAEEEDLKDPLTFQLCPCCGEPVDSAHTIGDFKCEKCDKLFVQQNSLDRHYSIEHCEGEIFKCVDCRKDFKLKEHLIEHMKVHPLSKCIKCPDCSREFTRKYHLDRHIAQTGCNGAPRKQFVCKVCNKVFHRKDNLADHLRAHAGQGKRKKVFICEYCQKEFHGSALLNIHIRTHTGEKPYACDLCPKKFPSSGAMKKHRRMHTGERPYACKECHNRFAAKETLNRHMRTHTGEKPHSCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCNRAFNRKLRLTTHIKYMHEGAEPMSCSQCDKTFFRKEDLARHFLSHTGERPFECDVCHKSFAVKSSLKIHQLTHRKEPPCSCDTCGRAFIRQDCLMRHMRARHRDVLEDIMASAEKKRLQQQLLNAATEAVAKNQGSLTENMVWNELTLTESIKELLTILVDEACLQDFGFPDAPVDKILDSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLRLAKAEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00415305;
90% Identity: iTF_00415305;
80% Identity: -