Gcor008621.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gnatocerus cornutus
Gene Symbol
-
Assembly
GCA_029298725.1
Location
CM055513.1:6910679-6913876[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.2e-05 0.00098 19.8 1.8 1 23 136 158 136 158 0.99
2 16 0.00017 0.014 16.2 7.7 2 23 165 186 165 186 0.97
3 16 0.00023 0.018 15.8 4.3 1 23 193 215 193 215 0.98
4 16 0.0011 0.088 13.7 1.5 1 23 281 303 281 303 0.99
5 16 1.5e-05 0.0012 19.5 6.2 2 23 310 331 310 331 0.98
6 16 0.0001 0.0079 17.0 4.5 2 23 348 370 347 370 0.97
7 16 1.8e-05 0.0014 19.3 2.6 1 23 444 466 444 466 0.96
8 16 0.00026 0.021 15.6 1.1 1 23 472 495 472 495 0.93
9 16 1.6e-06 0.00013 22.6 0.8 1 23 500 522 500 522 0.98
10 16 1.6e-07 1.3e-05 25.8 1.5 2 23 533 554 532 554 0.97
11 16 2e-08 1.6e-06 28.6 0.8 1 23 561 583 561 583 0.98
12 16 2.4e-05 0.0019 18.9 1.6 3 23 595 615 593 615 0.92
13 16 0.00022 0.017 15.9 5.1 1 23 621 643 621 643 0.99
14 16 2.7e-05 0.0022 18.7 3.1 1 23 649 671 649 671 0.98
15 16 6e-08 4.8e-06 27.1 0.2 1 23 677 699 677 699 0.99
16 16 0.00014 0.011 16.5 0.2 1 23 705 729 705 729 0.93

Sequence Information

Coding Sequence
ATGATTAATAAAACGACAGAGTTGGTTATAGACAAAATATGTCGTTCCTGTATGTGCCAAAATGAGAATATGCGAAATGTCTTTGATTCTAAAGAACTGGGCGGCCAAACACTGCAACTCGCGGAAATGTTGATGGATTGCGCTGCTGTCGTTGTTGCGTCTGGAGATGGTCTTCCTAACCTCCTATGCGTCAATTGTGAAAACAAACTGAATCTAGCCTATGAGTTTAAGCAGCAATGCCAAAAGTCTGACTCTACTTTAAGAGAATTGACCAATCAAAGTGACTCTGTGATTAAAGAGGAGTCCTGTGACATTGTTGTTCAACCAGATTTCAACATTCCAGAACTATACAATGACAGTGACAGCGACGACGAGGACAACACCAAACGGAAATTGTCATCGTCTTTCACTTGTCCCTTTTGCCAGAAAGTGTTGAGGACGAAAAAGGGGCTGCGGATTCACCAGCGGCGTCACACAGGGGATAAACTTCGATCGTGTCATATTTGTAATGCCCAATTCACCAGGACACATCATTTAATCAGACACATGAAGACACACGTGAAGACTGATCCTGGACATGTATGCACAGAGTGTGGCATGTCTTTTATGAAACTCAGTCATTTGTTGTCTCATAAGAAAACGCATAAAACAGACGAAAAAAGCGACGAAGGTGAGAACGGCGAGCAGGCTGCCCCATCCGAGAATCTCAGCGATGGCGACAACACTCTGCCTATGGACATGGAGGACGACGATGATGGAGTTGGAGAGGAGGAGGAAGAAGACGCATTGGAAGACTACTTCAAACCAAAAACAAGGACTGCAAAAAAAGACAAAGGGACTTatgaatgtaaatattgttTTAAGATTATGACGACATTCGTGGGGCTCAAGATCCACATGAGGCGGCACACGGGCTCAGATCTAGCCAAATGTAAACTTTGCGAGAAAAGCTTCACAAAAACGAGCCACCTGAAGCGCCACCTTCAGACGCACGGCATCCGTGAACTAGAGAAACCAAAGCCAGTAGAAAAAAAAGTTATGGAATGCGAATTCTGTGACCGAAAATTCAAGTACAAGAAAAGTTTCAACCACCACATGCAAACCGAGCACGGAATGTCCGATGAAAGTGACGTTCCGTTGAGCACTTACGTCTCGAAAACCGACGACAATAAAGACGAAGAAAACAAAGAAGATGAACCCTTAGTTCCACCGCCACCAGAGCCTACAGAAAAAGAGGAAGTTGAGAAGGTACTAGAGCCAGAAGCGACTCTTTCTGACTCAGATGTCAAGGACAGTCCTCCTACTGCGAAATCCGCCAATCACAAAATTCATGTGTGTCACGTGTGTGATGCAGCGTTTGCGAGAGCCAATCATTTGACGCGCCACATGACTTTACATCGAGCGTTGTTGATACATAAGTGTGATAGGTGTGATAAGGCGTATGCGACTTTGGAACATTTGGCGAAGCATGTGGAGGAGGATCATATTAATAAGCCTTATGCTTGTACGATTTGTAATAAGCCGTTTAGTCGGGGTGAGCATTTGATTCGGCACTTGAAAGTGCATCAGAGCGCGACTGAGAAAGAAGACAATTTGACGTGTTCAATCTGCGAGAAGACTTTCAGCAGgtctGACCATTTGGCCCGTCATATTAAAATCCACTTACTGCAGGACAAACGACATGTTTGCCCAGAGTGCGGTAAAGCTTTCAATCGACTTGATAATCTCAAGACCCACCAACGTATACACACAGGAATTAAAGACACCACGAAGTTGCATCTCTGCATTTATTGTGGAAAAGAGTTTAATAATTCAAGTAATATGATCGTACACATGCGTCGTCACACTGGTGAGCGCCCCTACAAATGCAGTCAATGTGGTAAAGGCTTTCCAAGGTCCCACGATCTCAAGTGTCACGAACGGACTCACTCTGGAGAGAAACCATACCATTGTGCCCTATGTGGTAAATCCTTCAATAAAAGCAATAAATTGTTACGCCACACCCGTGTCCATACCGGAGAACGCCCCTACGTTTGCAACATTTGTGGGCGTGCCTTCACCCAATCCAATGATCTTGCTCTACACATGCGTCGTCACACCGGAGCCCGACCATACGCCTGTGGGATGTGCCCCGCTCGTTTTATCCAATCAGGACAACTTAAATCCCATCGACGCACGACTGGTCATTGGGTGGAGACTCAACCTGATCTCAAAGGTGGGCATAGAGTTGAGCCGGTCACGCCCGTGGTGGAGCCTACTCCAATTAGGTTTAAAACACACGGAAAACCGAAGAAGGAGGAGGAGCTGGATGACACGAAAAATGTTAAGTTGCTGGCTCACAGCATGGGCTTCATGGGGTCTCTAAGTGTTTCGGGAGAAAATTTGGTGCTCGATCCGAAAATCGTAGAGTTACAAAATTCAGGACTTATTAATCTCGTTGGAAGTGCGGGGGATCTTAAATTCAAGACAGACAGTGGTGGATTCGTAATGACACCTGTCAAGAGCGAAGTTGGTGGTAAAAATCAGGATGTAGGGGCGGCGTCAGCGTCCGCGGCGTTTCAACAAGGTGTTTCAGCGGTGACTTATTCGATAGTTGCCCCGGTGGCGAGTTCGGCGACTTTTACAGCGGCAGATTATagtaattatcaaaattttggttga
Protein Sequence
MINKTTELVIDKICRSCMCQNENMRNVFDSKELGGQTLQLAEMLMDCAAVVVASGDGLPNLLCVNCENKLNLAYEFKQQCQKSDSTLRELTNQSDSVIKEESCDIVVQPDFNIPELYNDSDSDDEDNTKRKLSSSFTCPFCQKVLRTKKGLRIHQRRHTGDKLRSCHICNAQFTRTHHLIRHMKTHVKTDPGHVCTECGMSFMKLSHLLSHKKTHKTDEKSDEGENGEQAAPSENLSDGDNTLPMDMEDDDDGVGEEEEEDALEDYFKPKTRTAKKDKGTYECKYCFKIMTTFVGLKIHMRRHTGSDLAKCKLCEKSFTKTSHLKRHLQTHGIRELEKPKPVEKKVMECEFCDRKFKYKKSFNHHMQTEHGMSDESDVPLSTYVSKTDDNKDEENKEDEPLVPPPPEPTEKEEVEKVLEPEATLSDSDVKDSPPTAKSANHKIHVCHVCDAAFARANHLTRHMTLHRALLIHKCDRCDKAYATLEHLAKHVEEDHINKPYACTICNKPFSRGEHLIRHLKVHQSATEKEDNLTCSICEKTFSRSDHLARHIKIHLLQDKRHVCPECGKAFNRLDNLKTHQRIHTGIKDTTKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSQCGKGFPRSHDLKCHERTHSGEKPYHCALCGKSFNKSNKLLRHTRVHTGERPYVCNICGRAFTQSNDLALHMRRHTGARPYACGMCPARFIQSGQLKSHRRTTGHWVETQPDLKGGHRVEPVTPVVEPTPIRFKTHGKPKKEEELDDTKNVKLLAHSMGFMGSLSVSGENLVLDPKIVELQNSGLINLVGSAGDLKFKTDSGGFVMTPVKSEVGGKNQDVGAASASAAFQQGVSAVTYSIVAPVASSATFTAADYSNYQNFG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01568241;
90% Identity
iTF_00415299;
80% Identity
-