Gpyl002946.2
Basic Information
- Insect
- Glyphodes pyloalis
- Gene Symbol
- Lrrfip1
- Assembly
- GCA_037074685.1
- Location
- JAYKKO010000002.1:19553688-19564831[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-53 1.2e-49 170.2 8.9 1 137 125 258 125 259 0.97
Sequence Information
- Coding Sequence
- ATGGGCAATTTGTCTAAAATGGCTACGCGCGACAATAGTGATGAGGAAAGCGGTGACGCGTTTACAGACGACGATTTTGGTGACAGTGATGAGGAAGCTGTGGTAGAACGGAGTGAAGAAACACAAAATTCGAATATCCCTGTCAATGAAACTGTTAATACAGAAATGCAGAACGTAAACGAAGAGGCCCCGGCCAAAGCGTATACCAATGGCTTTGGAAGCCAGCCTAAAGTGAACGGACATAAAAATGATGAACTATCGAGTGACACGGAGTGCCGAAGCAATGGTGATGTTAGTAGTGATATACGGAGAGATTCTCATGGTGATCAGAATCCGTCAATAGTTGGGATACTTGGAGACcaacaaaattatGCGGAGCAGcgcctcgcggcgcggcgggcggcgcgggcggagGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGAGGGAGCAGGAGGACCATGCCGACAAGGCGTACGACATGTACGCAGGCACCACACCCAAGACGGTGGGGCGGCGCGGCGGGTCGCGGCTGGCGGCGCTCAGCCCCGGCGGCGTGCACTCGCCGCGGCGCAGCTCCGAGGACTCCGCTGACGACACTTTCAACATAAAGGATCTCAGGCACGAGCTGAAGGAAGTGGAAGAGAAATTCCGCAAGGCGATGATTCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATAGAGGAGCTGCAGGAGGAGCACGCGCAGCTGACGGTATGA
- Protein Sequence
- MGNLSKMATRDNSDEESGDAFTDDDFGDSDEEAVVERSEETQNSNIPVNETVNTEMQNVNEEAPAKAYTNGFGSQPKVNGHKNDELSSDTECRSNGDVSSDIRRDSHGDQNPSIVGILGDQQNYAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGTTPKTVGRRGGSRLAALSPGGVHSPRRSSEDSADDTFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEHAQLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -