Gcon001827.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003347265.1
- Location
- PZYU01019097.1:1-4141[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-77 8.7e-73 246.5 7.3 58 300 26 260 11 260 0.93 2 2 0.0046 2.1e+02 2.3 6.7 119 170 271 322 262 334 0.73
Sequence Information
- Coding Sequence
- CCTCCAACTCGATCCTCCCGTGTTGCTGGGGGAACCCCCTTAGCCGTGGCGGGCGGGCGGCTGAGCACCGGGCTCGGTGTTGGAACACCCGTCGCTTACCATTCTTCCAGAAGGAGCTCTGAGGATTCTCTTGAAGAATTAGGCAGCATCAGAGATATAAggCACGAACTAAAAGAAGTTGAAGAAAAGTTCCGAAAAGCTATGATCCTGAACGCTCAGTTGGATAACGATAAAGCATCATTTTCATACCAACTAGAACTGTTGAAAGATAAACTAGAAGATTTGCAAGAACAGTATACTCAATTGCagCGGGAACACAAAGACAAGTGCCGATCCCACGAAGCCTTAGTTCGAGAGTGTCGATCAACGCGAGAGGAGCTGGAGAGATACACGGCGGCCCTGGCCTTGCGGGACAGATGCATCCAGGAGGCCGGCCTGGAGCTGGTTCCTGTGGAGACAGACGGGGAGGGAGCCGGGGCCGCGCTGGTCTCCCGCGCTGGGCGAGAAGCTCTGGAAGCGGCCGGCCACGGGGCACTGGatgTGCGATTGCAAACTCTGTGTTCTGAAAGGCAGGCGCTCGAAACAGAAGTTACTCAGTTGAAAGCGCAGTTGGAAGAAGAGAGATCCAAGAAGAAGACCAACTCGCATAACTCTGTTCACAACGGTCCCATGAACGGCTCCGACAGTGATTCTGATTCATTTGAACATCAAAGAGAAAATTCCAAATTAGTTGCCGATTATAAATTCCGTGCGTGTAAGGCGGAACAAGATGTTTTGACTCTCCAGGCTACGGTGGCCAGGTTAGATAGTCAGGTGACCCGGCTCAAGAGTGCCATGGAAGAAGCTGAACAGATGGAAAATGAACTCAAGGGGGATCGAAGAAAGCTGCAAAGAGaggcTCGTGAAGCACAAAACAGAGTCGAGGAACTGGAAACTGAGAATAGTCATTTGAATAAACGCCTCGACAAATTGAAGAACGCCAAGTCAGCTTTACTGAAGGAACTTTGA
- Protein Sequence
- PPTRSSRVAGGTPLAVAGGRLSTGLGVGTPVAYHSSRRSSEDSLEELGSIRDIRHELKEVEEKFRKAMILNAQLDNDKASFSYQLELLKDKLEDLQEQYTQLQREHKDKCRSHEALVRECRSTREELERYTAALALRDRCIQEAGLELVPVETDGEGAGAALVSRAGREALEAAGHGALDVRLQTLCSERQALETEVTQLKAQLEEERSKKKTNSHNSVHNGPMNGSDSDSDSFEHQRENSKLVADYKFRACKAEQDVLTLQATVARLDSQVTRLKSAMEEAEQMENELKGDRRKLQREAREAQNRVEELETENSHLNKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -