Gpap008063.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- Zbtb41
- Assembly
- GCA_000818775.1
- Location
- Scaffold0:298144-300463[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0068 45 4.4 0.0 26 52 211 237 203 239 0.89 2 7 0.092 6.1e+02 0.8 0.0 27 48 267 288 262 290 0.88 3 7 0.00019 1.2 9.4 0.1 26 48 327 349 314 351 0.87 4 7 0.00022 1.4 9.2 0.2 22 52 382 411 373 412 0.91 5 7 0.011 73 3.7 0.1 23 46 410 433 408 439 0.87 6 7 0.00013 0.89 9.9 0.1 23 45 439 461 435 465 0.86 7 7 0.046 3.1e+02 1.7 0.5 23 50 467 494 463 496 0.86
Sequence Information
- Coding Sequence
- atgAACTGTCGACTTTGTTTGACGCATGTAGCGGTCGATGATGGTTTCAGATTGTACGATGTGCTGGACAGCAAGACCGAAGCTTCGGAAATGGTTAAACTTATAGAGAAGTACTTGCACATTGACGTGCAGAGGAGTGACGCAATATCCACGCTCATATGCCAACGGTGCTACGATAAATTGGAAGAATTTAATTCCTTTGCTCAGCACGTGGCGGAAAAGCAGAATATTCTGTGTAATGATTACTTTCGAATCATTCAAAGGGAGGAAATCGATAATAAGACTAATTTTAACGAATTTCCATCTATTCCTTTGGGAAAATTGAGAATTGAGTCTCTGGTAATTGAAGAAGTTCGACTTAATAATACTAATGGCGAGACATTCTCTACAAAACCCATGAACTCTGTCGAAGAGAATATCAGATGCAATGATCAATTAGAGGAGTCCTTATCAGATGATATACCATTATTAACTTTAAAATATCGAATGAAGGCAATCAGCAAAAAAGGTAAAAGCTTATCTAGAGGAAAAAGTGGGCGGCCCAAGATTCCTAAGCAAAATGATGAGCGAGAAAAGAGAAGAGCAAAACGTTATAATGTCGAAGTGTCAATAGCGGCTGCCATGCAATTAATTTGTGATATTTGTGAGGCTCAGTTTAAATCGTGGTCATTGTTACGTGATCATTTTAAATTAACTCACAACCAAGCACCTTATGTGAAATGCTGTGATTCTACATTCCATGCTACCAGTACTTTAGTACAACATATCAATTGGCACAAGAACCCCAACATATATAGATGCAACACTTGCGGTAAAAAGATGCGGTCCCAAAACGGATTGACACGTCACTTGGGTATCGCCCACGGGGAAGATCTGGATATGCTGCAACGTTTTAAGTGTAAGAAATGTTCAAGAGGTTTTCGTAGCCGGAAATTGTACGAGAAACATGTAAAAAGTCATGTACAAGGAAGTGACTTTTCTTGCCATGTTTGTGATAAAAAATATAATAACTCAAACAATCTGAGGCGCCATATCGAATCCATACATGAGAACATTTAtttttttGTTTGTGATGTCTGCGGGAAGCAATTCAAAAGTAAGGGTTCTTTCGAACGCCACTGTCGCGAGCATCAAGGTATTATTGAGCCGCCAATTCAATGCCCGTTATGTTTAGTTTGGCTTAAGAATCGTCACAGTTTACGTTTACATGAATTAAATCATAATAAAAAACCGACGCCATGTAATATATGCGGTAAGAATTTCAAAACAATTAATTCCCTTCGAAGACACAAAGCCTATTGGCATGGAATGGaaaaaaaTTTACGCTGTACATTTTGCGATAAGATTTTCCGGCAAGAAAGAAACTTAAAAGAACATATCGCTATACACACAGGCGATCAGTTATATGCTTGTCCTCATTGCCATAAAGAATCACGTTCCAAATCCAACATGTATGTGCATATTAAACGGCAACACCCAGCAGAATGGTTAAAATCGAAAATGGACCGTTACAACATAAAAACGAACCAACAACAATCCATCCGCTGA
- Protein Sequence
- MNCRLCLTHVAVDDGFRLYDVLDSKTEASEMVKLIEKYLHIDVQRSDAISTLICQRCYDKLEEFNSFAQHVAEKQNILCNDYFRIIQREEIDNKTNFNEFPSIPLGKLRIESLVIEEVRLNNTNGETFSTKPMNSVEENIRCNDQLEESLSDDIPLLTLKYRMKAISKKGKSLSRGKSGRPKIPKQNDEREKRRAKRYNVEVSIAAAMQLICDICEAQFKSWSLLRDHFKLTHNQAPYVKCCDSTFHATSTLVQHINWHKNPNIYRCNTCGKKMRSQNGLTRHLGIAHGEDLDMLQRFKCKKCSRGFRSRKLYEKHVKSHVQGSDFSCHVCDKKYNNSNNLRRHIESIHENIYFFVCDVCGKQFKSKGSFERHCREHQGIIEPPIQCPLCLVWLKNRHSLRLHELNHNKKPTPCNICGKNFKTINSLRRHKAYWHGMEKNLRCTFCDKIFRQERNLKEHIAIHTGDQLYACPHCHKESRSKSNMYVHIKRQHPAEWLKSKMDRYNIKTNQQQSIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00747013;
- 90% Identity
- iTF_00748647;
- 80% Identity
- iTF_00750687;