Basic Information

Insect: Glossina palpalis
Gene Symbol: L
Assembly: GCA_000818775.1
Location: Scaffold303:433776-442916[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.2e-06 0.00041 20.8 1.7 1 23 191 213 191 213 0.98

2 19 0.42 33 5.3 5.7 1 23 219 241 219 241 0.98

3 19 2.3e-07 1.8e-05 25.1 3.1 1 23 247 269 247 269 0.99

4 19 1e-05 0.00083 19.8 0.3 1 23 275 297 275 297 0.98

5 19 0.62 49 4.8 1.0 2 23 362 385 361 385 0.90

6 19 0.0072 0.57 10.9 0.3 3 23 413 434 411 434 0.96

7 19 0.062 4.9 8.0 0.4 1 23 533 555 533 555 0.96

8 19 0.0026 0.21 12.3 0.8 2 23 563 584 562 584 0.96

9 19 2.4e-05 0.0019 18.7 0.9 1 23 592 616 592 616 0.93

10 19 0.14 11 6.9 0.0 1 19 621 639 621 641 0.96

11 19 9.1 7.2e+02 1.1 0.4 1 23 651 674 651 674 0.91

12 19 0.0014 0.11 13.2 2.9 1 23 713 735 713 736 0.96

13 19 3 2.3e+02 2.7 0.9 1 23 891 915 891 915 0.89

14 19 0.00099 0.079 13.6 4.6 2 23 924 946 923 946 0.96

15 19 0.12 9.1 7.1 0.1 1 23 952 974 952 974 0.92

16 19 0.28 22 5.9 0.3 2 20 982 1000 981 1003 0.93

17 19 3.9 3.1e+02 2.3 0.6 2 23 1094 1115 1094 1115 0.93

18 19 0.00047 0.037 14.6 0.1 1 23 1125 1147 1125 1147 0.97

19 19 0.0098 0.77 10.5 0.7 1 23 1154 1176 1154 1176 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.2e-06	0.00041	20.8	1.7	1	23	191	213	191	213	0.98
2	19	0.42	33	5.3	5.7	1	23	219	241	219	241	0.98
3	19	2.3e-07	1.8e-05	25.1	3.1	1	23	247	269	247	269	0.99
4	19	1e-05	0.00083	19.8	0.3	1	23	275	297	275	297	0.98
5	19	0.62	49	4.8	1.0	2	23	362	385	361	385	0.90
6	19	0.0072	0.57	10.9	0.3	3	23	413	434	411	434	0.96
7	19	0.062	4.9	8.0	0.4	1	23	533	555	533	555	0.96
8	19	0.0026	0.21	12.3	0.8	2	23	563	584	562	584	0.96
9	19	2.4e-05	0.0019	18.7	0.9	1	23	592	616	592	616	0.93
10	19	0.14	11	6.9	0.0	1	19	621	639	621	641	0.96
11	19	9.1	7.2e+02	1.1	0.4	1	23	651	674	651	674	0.91
12	19	0.0014	0.11	13.2	2.9	1	23	713	735	713	736	0.96
13	19	3	2.3e+02	2.7	0.9	1	23	891	915	891	915	0.89
14	19	0.00099	0.079	13.6	4.6	2	23	924	946	923	946	0.96
15	19	0.12	9.1	7.1	0.1	1	23	952	974	952	974	0.92
16	19	0.28	22	5.9	0.3	2	20	982	1000	981	1003	0.93
17	19	3.9	3.1e+02	2.3	0.6	2	23	1094	1115	1094	1115	0.93
18	19	0.00047	0.037	14.6	0.1	1	23	1125	1147	1125	1147	0.97
19	19	0.0098	0.77	10.5	0.7	1	23	1154	1176	1154	1176	0.95

Sequence Information

Coding Sequence: ATGTACTCTACGCACACATCGTCCAGTTACTCGCCTTCAATATCGGATGGTACTCTTACACCGAATTCTTTACATCATCAGCATCTTGGTGTTGTTTCGCACCTAAACTCTATGTATACGCATAGCGAAGAAGATTCTGCCTTACATACGCAACGTCATACTCAAACGCAAAAATCCAATGGTTGTTTAATGGATGGCGCTGACTATGAAGACAACGAGGAGAATTTACGCAAAAATAATGATACAAAGACAAACAATGAAGGTACGCCAACTACAAATGCTGCCGACAATAATAATGGTAAACAACAACGCCAGCACCAGCACCAGCATTCCCATCATCAACAACTAAAACAGCGTCAGGGACGTCATCATCGTCATGCAGAGCATGTCATGAGAATTCCTACAAAATTACGAAAAATCGATAGGGATTCAGAAGTTTGCAGTGGTAGTGTTGGTGGTGTTGTTGGTGGTACCACTGGCAGCGGTAACACTAGCAGTAACAATGCCACTAAATTTGATAAGTTGACAGGCGATGGCATTAAGCACAGTGGCAATACGGCCGACGGATCCTATCAATGTCAGTTCTGTGATAAATCATTTCCACGTCTTGGTTACTTaaaaaaaCACGAGCAGAGCCATGCCGAACACTTGCCTTTTAAATGCGAATATTGTGCTCGTCTATTTAAGCATAAACGCTCACGGGATCGTCATACAAAATTACATACCGGAGATCGTCGTTATCGCTGTCCTCACTGTGAGGCAGCATTTTCCAGAAGCGATCATTTGAAAATTCATATGAAAACCCATGACAATCAGAAACCATTCCAGTGCACGATTTGTAATAGAGGTTATAATACAGCGGCCGCTCTCACTTCTCATATGCAAAATCATAAGAAACAAGCCGCTCTCTTAGCCGCCGGCGGTAATCCTCAAACTCTTAACTATAGTCCTCGATCTACTGGCTCTGCGTCAAGTAATGGCAGTTTGCATAAACGCCGTTACAATCTTGCAATTGAACCAGAGAATAGTCCAAATCGTTTGGAGTTTCCTAAACGAGTGCGCTGTTCGTCATCTAACTTTCTCAAGTGTACATTTTGTACTAAATCCGATTTTGTTAATATGGAACAACTGAACTCTCACATTCAGCGTATGCACGAGAAAGAGTTAATCAATACGATGCCTCAAGCTTCCACCACCACTACACTGCCTGCCGATGGTAACGGTTTCCAGTTGGCCTGCGAGTACTGCACTATGAAATTCCCGAATATACCGACAATGTTTCAACATATGCGTTCCACTCATATCGATCGTCTTGCAAGCCCGAATTCCTACTTTGAGCATTTAAATCGTTTGGCAGCATCAGGCACATTCAGTCCACGTTTACTTACTAACCCACCGTTAAGAAGTTCTGCTAGCACCGAGGAGAATTCCATTAAGGAAGAAACTCAAACCAATAGTCCTAAGACCGTAGAGAATTCGGCAAAAACCAATGAAGATGAACCCACAGATCTAAGCCAAAATAATAGACATCAGCACTCTCCTCCTCCTGCTGCGCTGCAGGATCCTCCTTCGACAGCTACGGAAAAGCCAGGCGTCTACCTTTGCAATCAATGCAACGCCGGTTTACCAAATTTCGAGAGTTTTCGTAGTCATTTGCAAACTCATTTGGCCCAAAGTCTTAATTTAGTTTGTCATCATTGTGGCTTAGTACTGCGAGAGCTATCCGACTACGAAAGACATGTTATATCGCATTTCCTTATCACAAACTCTGAATACAATTGCCCGAGCAATTGTCAGAAGACCTTCACTAAATCGGACGATTTGCAAAAACATTTAATCGATCAGCATACAGTTACAGTATACAAGTGCGGAATATGTTCGGATATATTTGACACTAAAGTTGCTTTGCAGGTTCATTTCGCCTGCACGCATGCGGAAGAAATTAAAATTTTTCGTTGCTCAGCTTGCATGGATGTCTTTCGCAATGAAAACGATTTCGGTGTACACGTGAAAACACGTCATCAGGTTGTCAACCCGAATCCGGCCCCTGTTAACAATTTGCAATGCATGTTTTGTACGGCAGTGTGCTCATCGGATCTCGAAATGCAATTTCATTTGGCTGCGCATGCCCGACAATTCCGTTGCCCCTCGTGTCCGGAAACATTTCATGTTGAATTTCTTTTAGATAGACATATGCAAACGCACCACGGCGAACGTGCTGCCGTCCCTCAAAAAGACGGTTTCGATGAGAGTTCCACATCCACATCGAGAAATAATAGTTTAGCGCCTATGAACTCTTTATACGTTAATGCTTTATTTGGTAAGGCACCGTTAGTGCCTTTGGCGACTCAAAATAACAACAACACAATTTTGGATTACAATATGGCCTTTGCTACGCATATTAATAAAGGTTTGTTCCCTAACGTTACTGCCCAAAAGTTTTATAATCCTTTGCAAATCGATACGAACGCTATGAAACACTCAGCCTTAATGTATGGTTTAAGTCAGCGTTACTTTGATACAAATCGCTCGGTAATAGATCTATATAATCAGAATCATGCCGaaaaaaaTGCAATGACGGGAAATTACTTCATTAGCCCGAAGCAGCCAACAAATGCAGAAGTGCTTAACCGTCCCGAATTGTCGGCTTCACCATTAAGTTCTGCCGGTTTCAGTTGTGGTATATGTGAACGTAATGATTTCCGTACGGAATCTGAGGTACACTCACATCGTAAAATAGTTCATAATTTGAAAACTGGTGTCAGTTTACGTTGCGCTTATTGCTCGGGTAATTTTAAATCACGCAGTGAACTAGAACATCATATGAAAACCTGCCACAATTCCACTGGTAAACATAAATGCTTGATATGCGATGAAATCTTCCCTTCACCTGCCATACTGGCGGAGCATAAGTTGCAGCATTCAAAAGTGGGACAATCAGGCAAATGTTCACATTGCTCGAAAGTTTTGCCTGACGTAGCAGCGTTTAAGTCTCATCTACCCGAGCACAACAACGAAGGTCAAATGCCAGTACAATGCATATGCTGCCGGCAAACTTTACATTCCGAGTTCGAGGTGGGATTGCACGCCAAATTTCATGTGAAGTCTTCACAAGTAACCGAGAATGTTTGCGCATTATGTTTAGAACCAATAGCATCTGGGTCTCCGACGGAGGCTAAAGTTTGCGAGAAATGTTGTCGTAAGCATAATCTGAACAATAAATTCAAGCAACCGGAAAACTTCGAACGACCGTCCATGCATCGACAATATGTTGAAAACCGATGCAACCTATGCAAAATGATTTTGCCTCATGTCCAAAAATTGCAAGAACACCTAGTGGAGCATACGTTCGCGGGTTGCGAAGATCGTGGCTTTAATTGTTATATATGCTCCGCGGTGTTTACGGTACCGAGCGGTTTACTTAATCACATGAACGATCACGGTTTGAATGCTCGTCCATACGATTGTAATTTATGTCCAGAGAAATTCTATTTTCGAGCCGAACTTGATCATCATCTAATTGATCACGATGTACGTGATAAAGGTCCCATAAAAAGTGAACTGGATCGACCACTAATAAATGAAAATAAGAACGTTGCGACGAAAGGCTGTACAACGGCCAAATCCGAAGTTCCTTTAAAGCTTACAGAGGTTAAACAAGAGATTATAGACGCTGAGGAAGCAATTAATACAAACGAAGATGATGAATATATTGAGGTAGAGAAAATCAATGAAACAACATCACTGGAGGTAAGAAAGCAAGAGAAGTCCGATTCGGAAAATTCCTCGGATGAGAAGTAA
Protein Sequence: MYSTHTSSSYSPSISDGTLTPNSLHHQHLGVVSHLNSMYTHSEEDSALHTQRHTQTQKSNGCLMDGADYEDNEENLRKNNDTKTNNEGTPTTNAADNNNGKQQRQHQHQHSHHQQLKQRQGRHHRHAEHVMRIPTKLRKIDRDSEVCSGSVGGVVGGTTGSGNTSSNNATKFDKLTGDGIKHSGNTADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQTLNYSPRSTGSASSNGSLHKRRYNLAIEPENSPNRLEFPKRVRCSSSNFLKCTFCTKSDFVNMEQLNSHIQRMHEKELINTMPQASTTTTLPADGNGFQLACEYCTMKFPNIPTMFQHMRSTHIDRLASPNSYFEHLNRLAASGTFSPRLLTNPPLRSSASTEENSIKEETQTNSPKTVENSAKTNEDEPTDLSQNNRHQHSPPPAALQDPPSTATEKPGVYLCNQCNAGLPNFESFRSHLQTHLAQSLNLVCHHCGLVLRELSDYERHVISHFLITNSEYNCPSNCQKTFTKSDDLQKHLIDQHTVTVYKCGICSDIFDTKVALQVHFACTHAEEIKIFRCSACMDVFRNENDFGVHVKTRHQVVNPNPAPVNNLQCMFCTAVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGERAAVPQKDGFDESSTSTSRNNSLAPMNSLYVNALFGKAPLVPLATQNNNNTILDYNMAFATHINKGLFPNVTAQKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRSVIDLYNQNHAEKNAMTGNYFISPKQPTNAEVLNRPELSASPLSSAGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKVLPDVAAFKSHLPEHNNEGQMPVQCICCRQTLHSEFEVGLHAKFHVKSSQVTENVCALCLEPIASGSPTEAKVCEKCCRKHNLNNKFKQPENFERPSMHRQYVENRCNLCKMILPHVQKLQEHLVEHTFAGCEDRGFNCYICSAVFTVPSGLLNHMNDHGLNARPYDCNLCPEKFYFRAELDHHLIDHDVRDKGPIKSELDRPLINENKNVATKGCTTAKSEVPLKLTEVKQEIIDAEEAINTNEDDEYIEVEKINETTSLEVRKQEKSDSENSSDEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746926;
90% Identity: iTF_00746926;
80% Identity: -