Basic Information

Insect: Glossina palpalis
Gene Symbol: -
Assembly: GCA_000818775.1
Location: Scaffold496:101326-124898[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.4e-06 0.00035 21.0 1.6 1 23 671 693 671 693 0.97

2 18 7.9e-05 0.0063 17.1 0.2 1 23 699 721 699 721 0.97

3 18 5.3e-05 0.0042 17.6 0.6 1 23 727 749 727 749 0.98

4 18 5.7e-05 0.0045 17.5 2.2 1 23 755 777 755 777 0.96

5 18 0.00024 0.019 15.5 4.9 1 23 783 805 783 805 0.98

6 18 0.00011 0.0084 16.7 5.8 1 23 811 833 811 833 0.97

7 18 3.7e-07 2.9e-05 24.4 5.4 1 23 839 861 839 861 0.98

8 18 8.3e-07 6.6e-05 23.3 1.7 1 23 867 889 867 889 0.97

9 18 8.8e-05 0.007 16.9 6.7 1 23 895 917 895 917 0.97

10 18 6.3e-06 0.0005 20.5 6.7 1 23 923 945 923 945 0.98

11 18 8.1e-06 0.00064 20.2 4.5 1 23 951 973 951 973 0.98

12 18 5.1e-05 0.0041 17.7 8.3 1 23 979 1001 979 1001 0.98

13 18 8.3e-06 0.00066 20.1 6.7 1 23 1007 1029 1007 1029 0.97

14 18 9e-07 7.2e-05 23.2 7.7 1 23 1035 1057 1035 1057 0.98

15 18 0.00028 0.022 15.3 9.5 1 23 1063 1086 1063 1086 0.95

16 18 0.0001 0.0079 16.7 0.9 1 23 1092 1114 1092 1114 0.98

17 18 0.004 0.32 11.7 5.9 1 23 1124 1146 1124 1146 0.98

18 18 1.2e-05 0.00099 19.6 1.6 1 23 1152 1175 1152 1175 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.4e-06	0.00035	21.0	1.6	1	23	671	693	671	693	0.97
2	18	7.9e-05	0.0063	17.1	0.2	1	23	699	721	699	721	0.97
3	18	5.3e-05	0.0042	17.6	0.6	1	23	727	749	727	749	0.98
4	18	5.7e-05	0.0045	17.5	2.2	1	23	755	777	755	777	0.96
5	18	0.00024	0.019	15.5	4.9	1	23	783	805	783	805	0.98
6	18	0.00011	0.0084	16.7	5.8	1	23	811	833	811	833	0.97
7	18	3.7e-07	2.9e-05	24.4	5.4	1	23	839	861	839	861	0.98
8	18	8.3e-07	6.6e-05	23.3	1.7	1	23	867	889	867	889	0.97
9	18	8.8e-05	0.007	16.9	6.7	1	23	895	917	895	917	0.97
10	18	6.3e-06	0.0005	20.5	6.7	1	23	923	945	923	945	0.98
11	18	8.1e-06	0.00064	20.2	4.5	1	23	951	973	951	973	0.98
12	18	5.1e-05	0.0041	17.7	8.3	1	23	979	1001	979	1001	0.98
13	18	8.3e-06	0.00066	20.1	6.7	1	23	1007	1029	1007	1029	0.97
14	18	9e-07	7.2e-05	23.2	7.7	1	23	1035	1057	1035	1057	0.98
15	18	0.00028	0.022	15.3	9.5	1	23	1063	1086	1063	1086	0.95
16	18	0.0001	0.0079	16.7	0.9	1	23	1092	1114	1092	1114	0.98
17	18	0.004	0.32	11.7	5.9	1	23	1124	1146	1124	1146	0.98
18	18	1.2e-05	0.00099	19.6	1.6	1	23	1152	1175	1152	1175	0.96

Sequence Information

Coding Sequence: ATGAATACAGATCATGCAACGGTTACAACAAGCGCAGCAACGGCAGCAACACCTGGTGAGTCGCCAACATTTATTACGACAGCTTCTACTTCCCCTATTATTGTCATAACTACTGCTCCAACGTCAGCAGTGGAATcaataacaacgattgttgctaatgagaatgaaagacgacagcagcagcagcagcagcaacaacaacaacaacaacaacaattacaaaattcacatcagcagcataatagaaattctcctcctcaacaacaacatcaacaacaaattgatcttgggcagcctttacaattacaacaacatcagcagcaacaacaacaacaacaacaacatataaATGAGTCGCATATTTTAACGCTTCAACCACAGCAACAATCTATTGCAACTAGTCGGCCGTACATGTCGTCGTCGTCTAATATTGCAATTATTACTGACAGGGGTAAGGGCAATGATGGTGATGGCGTTCTTAATGTCCCGCCAGCATCACCTGCCCCGTCTATATCATTAACATTACCATCGCCAGTTTTAACAAAATCGACACCAGGCAAACTTTTGGTTGATAATCAAGGCATCATACGGCAGACGGCATTATCATCGGGAGTAGTTGCAATTGCAAGTACGCCGGGAGCAGAAACCTCAGCGAGTGTCGTTGGGCCACGGTCTGTGAGCTATTCAGCTCCTAATAGTAATGTGGTAGTTAAAACGCCTTCGCCGACTTTGCTGCAACATCATCACACTCAGCAAAGTAATCAAAGCACCGTTACAACCCCAACTTTGTTAAATGCTATCACAAGTGCAACGGCAGTTTCCGTAAAGACATCAACACCGTCAGCAACGGCAACACTTTTACCGAATAATTCACAAAATTTGGGAAAATACTTAGTGGTGACCAATTTCTTGCAAAGCGCTCCTCCTAATCATGGCTGTCAAGTTCAACCGTATAGTTTGAGTTCAGCCGTTAGTCAAGCCGCTATATCCTCTTTAATGCCTACAATATCAACTGCGAGAGCGGGCAGCGATACAGCAGTTGTAACTACAAAAACGGAAGCTTCCTCAAATAATAGCAATTGTGCCGAAACGTTGCAAGTTCATCAAACACAGATGTTAGCGAACGCACCTTTGGGAGGCCCACAACAACAATTGCCAAATGGGACCATAATTGCAACCCAACAGCAGCAACAGCAACGTCATTCTGCAGAGCAGCAACAATCACAGATGCATATTCACGCTTTGAATTCGAAcgataacgacagtcgtcagcgacaacagcaacagcaacagcagcagcatgcagctcagcaacagcagcaacagcaaGTGGCCTTGCTACAACAAGAGAACATTAAAGATGAAAAACCGTTTATTTCAAATGGTAAGATAACAGTAGTACCCACAAATCAGCATCAGCAGCAACAACAACAGATAATAATGCAGCATATATCGACCTCTTCAGCCATAACACCAGTGGCCGCTTCGTCCACTATCACCTTGGGTGCACCGAAAACTGAAATCAAAGAAGATAACAACAGCGGGGTGGTTGGCGGTAAAAGCTACACGGGCATCGAAATGTATAAAGTGAATATCGAAGACATTTCCCAGTTATTTACTTATCATGAAGTATTTGGCAAAATGCAGGCAGACGTCAATTTGTCGGCAACTGCTCATTCTATACCAAGCTCTATTGCTGGCACTAGCAACGCGTTGCCGAATGAAAGTAATAACAGCAGTGCAACGCCTGCGAGTAATGCGACTGCAGTAACAGCGACAGCTACAATCTCAACTTCAGGAACAGCCGCCAATACCATAGCAGGCGTGATACCTACCACTAGTTCCGCTCTACGCACCACTAATACCGATACGGCTGTGACCACCGTGCCTACATATGCATGCACAACTGGTCTAATTAAACTCAAAATGGAAGGTGGGGTTAGTGGTGGGGAGGAAAACTCTCAGACGGCTCTTGTGGCCGCCGACAATACGCTTGTTCCCACCGGCCATCACGTCTGTGATATATGTGGTAAAATCTTTTCGTTTCGTTATCAGTTAATTGTGCATCGTCGCTATCACAGTGAACGCAAGCCTTTCAATTGCCAGGTTTGTGGTCAAGGCTTTAACTCATCCGAAGATCTTACTAGTCATGGTAAGATACATATCGGTTGCTCCATGTTCACATGCATGGTATGTTTTAATGTATTTGCAAATAATGCTTCCTTGGAACGTCATATGAAACGGCATTCTACCGATAAGCCGTTTGCTTGTACGGTTTGCCAGAAAACATTCGCCCGGAAGGAACATCTGGATAACCATTTTCGCGCACATACTGGCGAAACCCCGTTCCGTTGTCAATTTTGTGCCAAAACGTTTACGCGTAAAGAACACATGGTCAATCACGTACGCAAGCATACTGGCGATACACCACATCGTTGCGATATTTGCaaaaaaaCTTTTACGCGTAAAGAACACTATGTCAATCATTACATGTGGCATACGGGGCAAACACCTCATCAATGCGAGTACTGTGGCAAAAAATATACGCGCAAAGAGCACTTGGCAAATCATATGCGTTCGCACACCAATGATACGCCGTTTCGTTGCGAAATTTGCGGTAAAAGTTTTGGTCGCAAAGAACACTTCACCAACCATATTCTTTGGCACACAGGCGAAACACCCCATCGATGTGATTTTtgttcgaagacgtttacgcgtaaggaacatcttttgaatcatgtacggcaacataccggcgaatcgccgcatcgttgttcgtactgttcaaagacgtttacgcgcaaagaacatctggtcaaccatatacgtcaacataccggcgaaacgccatttaagtgcacttactgcaccaaagcttttacgcgcaaagatcatatgattaatcatgtacgccagcatacgggtgagtcaccgcacaagtgcacattctgcacgaaaacgtttacgcgcaaggaacacctaactaatcatgtccgtcaacatactggtgagtcgccgcatcgctgtactgtttgcaagaagaccttcacgcgcaaggagcatcttactaaccacgtgcgcttacatacgggcgattcgcctcacaaatgcgagtactgtcagaaaaccttTACACGAAAAGAGCACTTGAACAATCACATGCGTCAACATTCGGGGGATAATCCGCACTGCTGTAATGTCTGCAACAAGCCATTTACACGTAAGGAACATTTAATAAATCACATGTCTCGTTGCCATACAGGTGATCGTCCATTCACTTGTGAAACTTGTGGTAAATCATTTCCGCTCAAGGGTAATCTATTGTTCCATCAGCGTAGCCACATGAAGGGCCAGGAAATGGAACGTCCATTCTCGTGTGAAAAATGTTCGAAGAAGTTCATATGCAAAGGTCATCTGGTATCCCATATGCGTTCGCATTCGGGGGAAAAACCACATGCTTGCACGCTTTGCAGTAAAGCGTTTGTGGAACGCGGCAACCTAAAACGTCACATGAAAATGAATCATCCAAATGCTCCAATGCCTCCGCCACCGGTTCCGCATCCTATAATACCAGCTGGAGTGTTGGCCACAGTCAAGCAAGAAATTAAACCAGTTATAAGCGAGCTGATTCCACATCAGGGCAGTGCAACACCTACAATGCATACTATCCAGCAGATAACTGCAGGCGCAGCAGCAACGGCGGCCGCAAATACCAATAACACAAAAATTAAGGTAACATTTAAAATGTATGAGAAAAGGAGGCAAAAAGTTATCGACTTAGAAAAGCTTGAAAATGTTAATTGA
Protein Sequence: MNTDHATVTTSAATAATPGESPTFITTASTSPIIVITTAPTSAVESITTIVANENERRQQQQQQQQQQQQQQLQNSHQQHNRNSPPQQQHQQQIDLGQPLQLQQHQQQQQQQQQHINESHILTLQPQQQSIATSRPYMSSSSNIAIITDRGKGNDGDGVLNVPPASPAPSISLTLPSPVLTKSTPGKLLVDNQGIIRQTALSSGVVAIASTPGAETSASVVGPRSVSYSAPNSNVVVKTPSPTLLQHHHTQQSNQSTVTTPTLLNAITSATAVSVKTSTPSATATLLPNNSQNLGKYLVVTNFLQSAPPNHGCQVQPYSLSSAVSQAAISSLMPTISTARAGSDTAVVTTKTEASSNNSNCAETLQVHQTQMLANAPLGGPQQQLPNGTIIATQQQQQQRHSAEQQQSQMHIHALNSNDNDSRQRQQQQQQQQHAAQQQQQQQVALLQQENIKDEKPFISNGKITVVPTNQHQQQQQQIIMQHISTSSAITPVAASSTITLGAPKTEIKEDNNSGVVGGKSYTGIEMYKVNIEDISQLFTYHEVFGKMQADVNLSATAHSIPSSIAGTSNALPNESNNSSATPASNATAVTATATISTSGTAANTIAGVIPTTSSALRTTNTDTAVTTVPTYACTTGLIKLKMEGGVSGGEENSQTALVAADNTLVPTGHHVCDICGKIFSFRYQLIVHRRYHSERKPFNCQVCGQGFNSSEDLTSHGKIHIGCSMFTCMVCFNVFANNASLERHMKRHSTDKPFACTVCQKTFARKEHLDNHFRAHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGDTPHRCDICKKTFTRKEHYVNHYMWHTGQTPHQCEYCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFGRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCSKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMINHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTVCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSGDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHMKGQEMERPFSCEKCSKKFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPIIPAGVLATVKQEIKPVISELIPHQGSATPTMHTIQQITAGAAATAAANTNNTKIKVTFKMYEKRRQKVIDLEKLENVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00749857; iTF_00747629; iTF_00746873; iTF_00748391; iTF_00749118;
90% Identity: iTF_00748391;
80% Identity: -