Basic Information

Insect: Glossina pallidipes
Gene Symbol: -
Assembly: GCA_000688715.1
Location: Scaffold60:338122-369380[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5e-06 0.00038 20.8 1.6 1 23 678 700 678 700 0.97

2 18 9e-05 0.0069 16.9 0.2 1 23 706 728 706 728 0.97

3 18 6e-05 0.0046 17.4 0.6 1 23 734 756 734 756 0.98

4 18 6.5e-05 0.005 17.3 2.2 1 23 762 784 762 784 0.96

5 18 0.00027 0.021 15.4 4.9 1 23 790 812 790 812 0.98

6 18 0.00012 0.0093 16.5 5.8 1 23 818 840 818 840 0.97

7 18 4.2e-07 3.2e-05 24.2 5.4 1 23 846 868 846 868 0.98

8 18 9.4e-07 7.2e-05 23.1 1.7 1 23 874 896 874 896 0.97

9 18 0.0001 0.0077 16.7 6.7 1 23 902 924 902 924 0.97

10 18 7.1e-06 0.00055 20.3 6.7 1 23 930 952 930 952 0.98

11 18 9.1e-06 0.0007 20.0 4.5 1 23 958 980 958 980 0.98

12 18 5.8e-05 0.0045 17.5 8.3 1 23 986 1008 986 1008 0.98

13 18 9.4e-06 0.00072 19.9 6.7 1 23 1014 1036 1014 1036 0.97

14 18 1e-06 7.9e-05 23.0 7.7 1 23 1042 1064 1042 1064 0.98

15 18 0.00032 0.025 15.1 9.5 1 23 1070 1093 1070 1093 0.95

16 18 0.00011 0.0087 16.5 0.9 1 23 1099 1121 1099 1121 0.98

17 18 0.0046 0.35 11.5 5.9 1 23 1131 1153 1131 1153 0.98

18 18 1.4e-05 0.0011 19.4 1.6 1 23 1159 1182 1159 1182 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5e-06	0.00038	20.8	1.6	1	23	678	700	678	700	0.97
2	18	9e-05	0.0069	16.9	0.2	1	23	706	728	706	728	0.97
3	18	6e-05	0.0046	17.4	0.6	1	23	734	756	734	756	0.98
4	18	6.5e-05	0.005	17.3	2.2	1	23	762	784	762	784	0.96
5	18	0.00027	0.021	15.4	4.9	1	23	790	812	790	812	0.98
6	18	0.00012	0.0093	16.5	5.8	1	23	818	840	818	840	0.97
7	18	4.2e-07	3.2e-05	24.2	5.4	1	23	846	868	846	868	0.98
8	18	9.4e-07	7.2e-05	23.1	1.7	1	23	874	896	874	896	0.97
9	18	0.0001	0.0077	16.7	6.7	1	23	902	924	902	924	0.97
10	18	7.1e-06	0.00055	20.3	6.7	1	23	930	952	930	952	0.98
11	18	9.1e-06	0.0007	20.0	4.5	1	23	958	980	958	980	0.98
12	18	5.8e-05	0.0045	17.5	8.3	1	23	986	1008	986	1008	0.98
13	18	9.4e-06	0.00072	19.9	6.7	1	23	1014	1036	1014	1036	0.97
14	18	1e-06	7.9e-05	23.0	7.7	1	23	1042	1064	1042	1064	0.98
15	18	0.00032	0.025	15.1	9.5	1	23	1070	1093	1070	1093	0.95
16	18	0.00011	0.0087	16.5	0.9	1	23	1099	1121	1099	1121	0.98
17	18	0.0046	0.35	11.5	5.9	1	23	1131	1153	1131	1153	0.98
18	18	1.4e-05	0.0011	19.4	1.6	1	23	1159	1182	1159	1182	0.96

Sequence Information

Coding Sequence: ATGAATACAGATCATGCAACGGTTACAACAAGCGCAGCAACGGCAGCAACACCTGGTGAGTCACCAACATTTATTACGACAGCTTCTACGTCCCCTATTATTGTCATAACTACTGCTCCAACGTCAGCAGTGGAATCACTTACAACGATTGTTGCTAATGATAATGAAAGacgacagcaacagcagcaacaacaacaacaattacaaaattcacatcagcaacataatagaaattctcctcctcaacaacagcatcaacaacaaattgatcttgggcagcctttacaattacaacaacaacatcagcagcagcagcagcagcaacaacaacaacaacaacaacaacaacatATAAATGAGGAGATAAAACAAATGTTACAGTCGCATATTTTAACATTTCAACAACAGCAACAATCTATTGCGACTAGTCCGCCGTACATGTCGTCGTCGTCGTCTAATATTGCGATTATTACTGACAGGGGTAACAGTAATGATGGTGATGGCGTTCTCAATGTCCCACCAACATCACCTGCCCCGTCTATACCATTAACATTACCATCACCGGTTTTAACAAAATCGACATCAGCCAAACTTTTGGTTCATAATCAAGGCATCGTACGGCAGACGGCATTATCATCAGGGGTAGTTGCAATTACAAGTCCGCCAGGAGCAGAAACCTCACCGAGTGTCGCTGGGCAACGGTCTGTGAGCTATTCAGCTCCAAATAGTAACGTGATAGTTAAAACGCTTTCTCCAACTTTGCTGCAACATCATCACCCTCAGCAAAGTAATCAAAGCACCGTTACAACGCCAACTTTACTAAATGCTATCACAAGTGCAACGGCGGTTTCCGTTAAGACGTCAACACCGTCAGCAACGGCAACACTTTTACCGAATAATTCACAAAATTTGGGAAAATACTTAGTGGTGACCAATTTCTTGCAAAGTGCTCCTCCTAATCATGGCTGTCAAGTTCAACCGTATAGTTTGAGTTCAGCCGTTAGTCAAGCCGCTATTTCCTCTTTAATGCCTACAATATCAACTGCGAGAGCGGGCAGCGATACAGCAGTTGTAACTACAAAAACGGAAACATCCTCAAATAATAGCAATTGTGCCGAAACGTTGCAAGTTCATCAAACACAGATGTTAGCGAACGCGCCTTTGGGAGGCCCACAACAACAATTGCCAAATGGCACTATAATTGCAACACAACAGCAGCAACAGCAACGTCATACTGCAGAGCAGCAACAATCACAGATGCATATTCACGCTTTGAATTCGAACGATAACGACAGTCGCcagcgacaacagcagcagcagcatgcagctcaacaacagcagcaacaacaaGTGGCTTTGCTACAACAAGAGAACATTAAAGATGAAAAACCATTTATTTCAAATGGTAAGATAACAGTAGTCCCCACAAATCAGCATCAGCAGCAACAACAACAAATAATAATGCAGCATATATCGACCTCTTCAGCCATAACACCGGTGGCCGCTTCGTCCACCATCACCTTGGGTGCACCGAAAACTGAGATCAAAGAAGATAACAACAGCGGGGTGGTTGGCGGTAAAAGCTACACGGGCATCGAAATGTATAAAGTGAATATCGAAGACATTTCCCAGTTATTTACTTATCACGAAGTATTTGGCAAAATGCAGGCAGATGTCAATTTGTCGGCAACTGCTCATTCTATACCAAGCTCTATAGCTGGCACTAGCAATGCTTTGCCGAATGAAAGCAATAACAGCAGTGCAACGCCTGCGAGTAATGCGACTACGGTAACAGCAACCGCTACAATCTCAACTTCAGGAACAGCAGCCAACACTATAGCAGGCGTGATACCTACCACTAGTTCCGCTCTGCGCACCACTAATACCGATACGGCTGTGACCACCGTGCCTACATATGCATGCACAACTGGTCTAATTAAACTCAAAATGGAAGGTGGGGTTAGTGGCGGCGAGGAAACCTCTCAGACGGCTCTTGTGGCCGCCGACAATACACTTGTTCCCACCGGCCATCACGTCTGTGATATATGTGGTAAAATCTTTTCGTTTCGTTATCAGTTAATTGTGCATCGTCGCTATCACAGTGAACGCAAGCCTTTCAATTGCCAGGTTTGTGGTCAAGGCTTTAACTCTTCCGAAGATCTTACTAGTCATGGTAAGATACATATCGGTTGCTCCATGTTTACATGCATGGTATGTTTTAATGTATTTGCAAATAATGCTTCCTTGGAACGTCATATGAAACGGCATTCTACTGATAAGCCGTTTGCTTGCACGGTTTGCCAGAAAACATTCGCCCGCAAAGAACATCTGGATAACCATTTTCGTGCACACACTGGCGAAACCCCTTTCCGTTGTCAATTTTGTGCCAAAACGTTTACACGTAAAGAACACATGGTCAATCATGTACGCAAGCACACTGGCGATACGCCACATCGTTGCGATATTTGTAAGAAAACTTTTACGCGTAAAGAACACTATGTCAATCATTACATGTGGCACACAGGGCAAACACCTCATCAATGCGAGTACTGTGGCAAAAAATATACGCGCAAAGAGCACTTGGCAAATCATATGCGTTCGCACACCAATGATACACCGTTTCGTTGCGAGATTTGTGGTAAAAGTTTTGGGCGCAAGGAACACTTCACCAACCATATTCTTTGGCACACAGGCGAAACTCCCCATCGATGTGATTTTtgttcgaagacgtttacgcgtaaggaacatcttttgaatcacgtacggcaacataccggcgaatcgccgcaccgttgttcgtactgttcaaagacgtttacgcgcaaagaacatctggtcaaccacatacgtcaacataccggcgaaacgccatttaagtgcacttactgcaccaaagcttttacgcgcaaagatcacatgattaatcatgtacgccagcatacgggcgaatcaccgcacaagtgcacattctgcacgaaaacgtttacgcgcaaggaacacctaaccaatcatgtccgtcaacatactggtgagtcgccgcaTCGCTGTACTGTTTGCAAGAAGACCTTCACGCGCAAGGAGCATCTTACTAACCACGTGCGTTTACATACGGGCGATTCGCCTCACAAATGCGAGTACTGTCAGAAAACATTTACACGAAAAGAGCACTTGAACAATCACATGCGTCAACATTCGGGGGATAATCCGCACTGCTGTAATGTCTGCAACAAGCCATTTACACGTAAGGAACATTTAATAAATCACATGTCTCGTTGCCATACAGGTGATCGTCCATTCACTTGTGAAACTTGTGGTAAATCATTTCCGCTCAAGGGTAATCTGTTGTTCCATCAGCGTAGCCACATGAAGGGTCAGGAAATGGAACGTCCATTCTCGTGTGAAAAATGTTCGAAGAAATTCATTTGCAAAGGTCATCTGGTATCCCATATGCGTTCGCATTCAGGGGAAAAACCACATGCTTGCACTCTTTGCAGTAAAGCTTTTGTGGAACGCGGCAACCTAAAACGTCACATGAAAATGAATCACCCAAATGCTCCAATGCCTCCGCCACCGGTTCCGCATCCTATAATACCAGCTGGAGTATTAGCTACGGTTAAGCAAGAAATTAAACCAGTTATAAGCGAACTGATTCCACATCAGAGCAGTGCAACACCTACAATGCATACTATCCAGCAGATAACTGCAGGCGCAGCAGGAACGGCGGCCGCAAATACCGTGCAATTGCCCCCTAGTTTGGTGCCTTTGGTTACCTCCACAATTACGTCGCATAATAGTcagaaacaacagcaacaacagcaacaacatcaaatacagcaacagcagcaacaggcaacagcaacacatcaacaagccagcttggtagcggcggctacagctcatcagcaacaagtacaacaacaacagcaacaacagcagcaacatcaacagctattacaactttccatacaacaggcggccgctcatcatcaattacaacaacatcagcaacagcagcagcaagaacagcgtcagcatcaacaaacgcagcaacagcaggcgacccaccatcaacagcaagctcaagctcaggcaagtgtagtgactgcagctacatcgcaccaaactcagcaacaacaaccgcaacaacaaaatcctcaacaatcacaagtccaacagcagcaacaacaacaacCTCCTCCACCACCACAAGTGCCAATTGCTCTAATACAAACGGATCCGGAAGCTTTGGCTCGAGCTGCTATGCAGCAACTGCAACACATACCAGCTAACGTTGAGCAACATCCCGTTGTTTACTAA
Protein Sequence: MNTDHATVTTSAATAATPGESPTFITTASTSPIIVITTAPTSAVESLTTIVANDNERRQQQQQQQQQLQNSHQQHNRNSPPQQQHQQQIDLGQPLQLQQQHQQQQQQQQQQQQQQQHINEEIKQMLQSHILTFQQQQQSIATSPPYMSSSSSNIAIITDRGNSNDGDGVLNVPPTSPAPSIPLTLPSPVLTKSTSAKLLVHNQGIVRQTALSSGVVAITSPPGAETSPSVAGQRSVSYSAPNSNVIVKTLSPTLLQHHHPQQSNQSTVTTPTLLNAITSATAVSVKTSTPSATATLLPNNSQNLGKYLVVTNFLQSAPPNHGCQVQPYSLSSAVSQAAISSLMPTISTARAGSDTAVVTTKTETSSNNSNCAETLQVHQTQMLANAPLGGPQQQLPNGTIIATQQQQQQRHTAEQQQSQMHIHALNSNDNDSRQRQQQQQHAAQQQQQQQVALLQQENIKDEKPFISNGKITVVPTNQHQQQQQQIIMQHISTSSAITPVAASSTITLGAPKTEIKEDNNSGVVGGKSYTGIEMYKVNIEDISQLFTYHEVFGKMQADVNLSATAHSIPSSIAGTSNALPNESNNSSATPASNATTVTATATISTSGTAANTIAGVIPTTSSALRTTNTDTAVTTVPTYACTTGLIKLKMEGGVSGGEETSQTALVAADNTLVPTGHHVCDICGKIFSFRYQLIVHRRYHSERKPFNCQVCGQGFNSSEDLTSHGKIHIGCSMFTCMVCFNVFANNASLERHMKRHSTDKPFACTVCQKTFARKEHLDNHFRAHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGDTPHRCDICKKTFTRKEHYVNHYMWHTGQTPHQCEYCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFGRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCSKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMINHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTVCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSGDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHMKGQEMERPFSCEKCSKKFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPIIPAGVLATVKQEIKPVISELIPHQSSATPTMHTIQQITAGAAGTAAANTVQLPPSLVPLVTSTITSHNSQKQQQQQQQHQIQQQQQQATATHQQASLVAAATAHQQQVQQQQQQQQQHQQLLQLSIQQAAAHHQLQQHQQQQQQEQRQHQQTQQQQATHHQQQAQAQASVVTAATSHQTQQQQPQQQNPQQSQVQQQQQQQPPPPPQVPIALIQTDPEALARAAMQQLQHIPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00750632;
90% Identity: iTF_00748391;
80% Identity: -