Gpap017407.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- -
- Assembly
- GCA_000818775.1
- Location
- Scaffold2326:296-1386[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-20 1.9e-16 59.7 0.0 2 45 23 67 22 67 0.97 2 2 0.9 2e+03 -1.3 1.0 3 13 100 110 99 114 0.84
Sequence Information
- Coding Sequence
- ATGTCTACAAGTAATTCAAATAACAGTGCCAGTGTGAAACGTAAACGATCTGTTAATCCACAAGGCGATGAGAATTTCATACGCGCTTTGGAAGCAGTGCGTTCGGGTGGTATCGGTTTTTGTAAGGCTGCAAAACTGTACGGTGTCAATAATCGCACGCTATGGTTAGAATATAAGAAACGGGGCTATCCCGTATCTCGACCGAGTATAAAATCGCGTGTCGTCAAACAAGAACCGAATTTGTCGCCGTCACCTACCCCGCCCGCTAACACTGCCGATGATACAAATGAAAATTATGAACATATGGCGGCAGCTGTCGCGGCTGCACAAACTGCCGCTCTTAATATGCAAATACCACCGACTTCCGATACGCCGACACCTTCGTTAATGTGCACACCTCACCATGCCGGCACAACGGCTAGTGCTGGCACTCATCCCACAATGATGAGTTTTCTCGACACGCGACATATTGACTTTCCTCCCAGTCTGCACTCCATGTCCAGACAACGATACATTGATGCCACAGGCGCGAGTGGGGGTCCCGGCGCGGGCACTATCAATTATATTCTTTTACCTTGGCCTCTTACAAAACTTTTAGCTCAAAATACAGGGACATTTATATTAGATAAACATCAACAGCATATGTAA
- Protein Sequence
- MSTSNSNNSASVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAAKLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPANTADDTNENYEHMAAAVAAAQTAALNMQIPPTSDTPTPSLMCTPHHAGTTASAGTHPTMMSFLDTRHIDFPPSLHSMSRQRYIDATGASGGPGAGTINYILLPWPLTKLLAQNTGTFILDKHQQHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748143;
- 90% Identity
- iTF_00748143;
- 80% Identity
- -