Gpap015670.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- -
- Assembly
- GCA_000818775.1
- Location
- Scaffold63:478542-489621[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-11 5e-08 32.7 0.0 1 38 311 349 311 354 0.89 2 4 6.9e-14 1.5e-10 40.7 0.1 2 39 366 403 365 406 0.94 3 4 5.7e-17 1.2e-13 50.6 0.0 1 45 420 465 420 465 0.97 4 4 4.7e-19 1e-15 57.3 0.0 1 42 472 514 472 516 0.96
Sequence Information
- Coding Sequence
- ATGGAATCGAAGAACGCAGAGGACGGCAATTCATCTTCGTATTACAGAGCCAAATTGGGTCTCCTGCGTACCGCCGAACAATTAAAAATCAAAGGTCTTTGCGAGACGGCTGAGAATGCGGATGATTTAAACGACGCTGCCACTGCTACTATCACTGTCTCCGAGAATATACAACAAGCCCAACAACAGCAATTAAGTCGTAAATCTCGTGTACGTAAACGTTCAAAATCGCCAGATTTGCAACAGTTACAGCAACAGCATCATCAGCAATCTCAACATCCGCAAGCAATTCTTATACAAAATCAGAATCAAGCTGCCATCGTTAGTTTGCAACAGACTTCGGCTGGAAATTATATACCGGTATCGGGTGTTCAAACGGTTCAAACCACTTCGGGTGGCGGACCACCGCAACCTGGTACTACAATAGTAACGGCAGACGATTCGGACTCTGATAAACCGACTCTGCAGAAAATCTGTAAAACCGAAGAggcttcggcttcaccggcttcgacgtcatcggcttcggcCTCGAATAATGCAGCTGGCGTAACTGCAGTGGCCAGCTCAGGACCGGCGATTGTCACACAAATTGTAGTAGCACGCGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAATGGCGGCATTTTAGGAGTACCGATGGGCTTTTTGGACTTCGCTCCTGAACCCCCAGCACCTTCAGCAACCCCTGTCACTGTTACTGAACACGTAGATCTATCTTGTAACCCTAGTACAGACACAAGAGATCTATCGAACATGTACAATTCCGACACGAGCGATGATTCAATGATGATTGCTAATGGTTCACCCCACGATCAAAATGAACCCCATTACACGAATTTAGATCAACAACAGCATGGTGGCGAACTCAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCTCTAAAGAATCAAAATATGAGTCTGACGAAGGCCTCCGTTACATATGGCATCCCCTCAACTACACTGTGGCAGCGTGCTCATCGTATGGGCATTGAAACGCCTAAAAAGGAGGGTGGTACAAAATCTTGGAATGAAGATTCATTGAATAATGCCTTGGACGCGTTGCGTTCCGGACAAATATCGGCTAATAAAGCGTCTAAGGCCTACGGTATACCTTCCTCGACTTTATATAAAATCGCTCGACGTGAAGGCATACGCTTAGCGGCACCATTCAATGCAGCACCCACCACTTGGACTCAAGATGATTTGGATCGCGCTCTGGCGGCTATACGAGCCGGTCACACATCGGTACAGAAGGCAAGTGCTGAGTTTGGTATACCAACAGGCACTTTATACGGCCGCTGTAAACGTGAAGGTATAGAGCTCTCAAGGTCAAATCCTACACCTTGGTCCGAGGATGCTATGAATGAAGCCTTAAATTCAGTACGCGTGGGTCAAATGTCCATTAATCAAGCCGCTATAAATTATAATTTACCCTATAGTTCTCTGTATGGCCGATTTAAGCGAGGTAAATACGATCAACAGTTCCAGTATAGTCCATCGCCGCACCAATCGGGTCACGGTAGTAGTACGCCGCAGCAGCAAACAGGCCAAACACCACAGCATATTCAACAGCATGTGGTGCATATACAGCAGCAACATCACCCATCTCAACAGCAACACGGCCAGCATATTCAACAGGATGTTGTGGTTACATCAAGCAGTCAGCAACAGCAAGTACATCAACATGGCGGCAGCTCAACAGCGGCCGGACAACAGCAGCAACAGCAAATCCAACAGATCTATCATCATCATAGCACACCCGAAAGGAGTTGA
- Protein Sequence
- MESKNAEDGNSSSYYRAKLGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAQQQQLSRKSRVRKRSKSPDLQQLQQQHHQQSQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVQTTSGGGPPQPGTTIVTADDSDSDKPTLQKICKTEEASASPASTSSASASNNAAGVTAVASSGPAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQQHGGELKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALDALRSGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLDRALAAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAINYNLPYSSLYGRFKRGKYDQQFQYSPSPHQSGHGSSTPQQQTGQTPQHIQQHVVHIQQQHHPSQQQHGQHIQQDVVVTSSSQQQQVHQHGGSSTAAGQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748140;
- 90% Identity
- iTF_00748140;
- 80% Identity
- -