Gpal010116.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- retn
- Assembly
- GCA_000688715.1
- Location
- Scaffold79:549123-637948[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8 5.6e+03 -2.1 0.0 42 65 106 128 98 141 0.76 2 2 1.2e-25 3.9e-22 78.5 0.0 2 89 271 356 270 356 0.96
Sequence Information
- Coding Sequence
- ATGGTACTGAATACTATGGACTGTTCGGGGCGTTCAAACACCATTGAACGCGACTCGGAATTGGGTGACGACATGTCACATGATGATCATACGGATGATGAAATGCGTGACTGTGATTCAGTTGAAAGAGAGCAGCAGCAACAACATATCGGTCGTAGTGAGCATTTAAATACGTCTTTACCATCGAACGGAGGTAACATGGAATATAGCGCCGTCGGGCGGCGTACTCCCGTAGACCATACCAATGATATGCCAATGAGTCATCATCATCATTTTCCATCAAATCATCCGTTAAGCGCTTTACGTGATTTTATAAGTATTGGAGGCCTGCATAGTATACAAAATTTGCAGCATAGCGATGTTTTGGAGAAATTAAAAATGCAAGTTCCTGATATGAAAGTTGGTTTAATGGAACAAGATTATGCCGTACATGCGGCCGCTTTCGGAGGAAACGTACTACCTGCCCCAATTAATACAGCTTTTACTATGCCACCAACAACAATGCCACCATTTAGTCACGTAGATCAAGGTGTAGTTTCTCAGTCTGGTAACAACGTTATAACGTGCAAAATTAAATCCATCCGAACGATAACGTCAAGTGGCGGTCCAATGCTTAATGGCTGCAATAGTAATAATAGCAACTTCTCATTTACATCACCCACCGCTCCTAGTACAAAAGATGTGAATCCCGCTTCTAATTCGTCTCCATTAAGCGATACATCAAATTCGTCCCAACAGAATAATGGCTGGAGTTTTGAAGAACAATACAAACAAGTCAGACAGCTTTACGAAATCAATGATGATCCCAAACGCAAAGAATTCCTCGATGATTTATTTTCATTTATGCaaaaaaaGGGTTCGCCCATAAACCGTCTACCCATAATGGCAAAATCCGTACTGGACTTGTATGAATTATACAATTTGGTAATTGCTCGCGGGGGATTAGTCGATGTTATTAATAAAAAGCTATGGCAGGAGATTATAAAGGGACTGCACTTACCGTCCAGCATAACAAGTGCAGCATTTACTCTCAGAACGCAATACATGAAATATCTTTATCCGTACGAGTGTGACAAGAAAAACTTAAGTACACCCGACGAGCTGCAAGCAGCGATCGATGGCAACCGGCGTGAGGGACGTCGTTCTAGCTATGGCCAATACGAGGCCATACATAATCAAATGCCAATGCAACAAATGGCCCGACAAAGTTTGTCAGGTGGCTTACAACAAATGTCGCCGCTGGCATTAGTTACACATGCCGCCGCCGCGAATAATCCACAAGCTGCTGCACAGGCTGCTGCTGCCGCGGCACACCATAGACTGATGACTGCTCCCGCCTTTGCCCAAATGCCGAATTTGATGTCTCACGATTTTGAGCAACGCATGTTGGAATACTTGAAACTGCTTCAAGCGAACAAAGAGCAGAATGTTGAGGCGGCGGCATCCGCCATTAGCAACAGTAACGGCAACGGCCTCACAATGACACATTCACAGCAACAATCGGCTCAACAACACCAGTCGACATCACGTCAAAGATCACAAAGTCCCGATGTTAGTCAACATGAAGCTTTCAATGTTTTGGGAATGTCACGTGTAGCATTATGGCAAATGGTCAATAATCATGCAAGTCCACCCGTCTCAGTGAATGCGTCTCTACATGGTGAAGGTGATAGCGGCGGTGATGTCGGCAACAGTAACGTCAAAGGTGGCAGCGAAATATCAGGCATTAAACGCGAACACGTGACTAGTCCAGAGCAATATGGACGAGAAGACTTTTTCAATCATCAGCCGCCGCCCACAAAACGAGCTAATTTTTACATACCGGTCGCTCCTAATTTCCAATATAAAGACAACGACTCGAATGGTGATCCTCATCCAGAACCTGACGAAGATGACGGTGAACAAAATTCAACGGCTAATTCCCCACCTGAAGATACAAATGAAAGACCCTTGAATGGCGTACCTGGTCATCTGTCAGGGTTTCAAGACATGAGCAACAGCGTACACCACGATAAATCTGATGATTCTGCCATAGAAAACTCACCATCGACGTCGGCCGCGTCAGGAGCTACAACTCAAGTCTCGCCCGTATCAACCAAGAAAATTCATTTATCTAAGCAAGTCCATCAAACTACCGACCCATCTAGCGACCATCCTAACGACGTTAAAAAATTAACAGCGTGTAACTCAGCTTTCGATTTATTGTCTGGTTTGCAATTCCGAGTGATACGTAATGATATTAGTACAAATGGTGAACACCGTCTTACAGTAAATCTGGAATTAAATGGTGTCACGTACTCGGGAATACTTAACGCAAATATTTCAGGTGCTACCAAAACGACGAAAACCGAAAGCGACATTGTCGACAGCAACAAGAATAGCGATAATGACGGTAACAATGTCAACTGCATTGGTAATCATTCTGCCAGCACAACTAATGCCTACGCGAGCACATTTGAACAGCCGAAGGTCGTGGACCCCGCGATCGCTGAGATCGCAAGTGATACTGAAACGCCACCAAAAAGACCAGCAGCTATCGTCACGTCAAATGGATCAACTAAGGCCTCGCTCAACAATACTTTAATCTCATCATAG
- Protein Sequence
- MVLNTMDCSGRSNTIERDSELGDDMSHDDHTDDEMRDCDSVEREQQQQHIGRSEHLNTSLPSNGGNMEYSAVGRRTPVDHTNDMPMSHHHHFPSNHPLSALRDFISIGGLHSIQNLQHSDVLEKLKMQVPDMKVGLMEQDYAVHAAAFGGNVLPAPINTAFTMPPTTMPPFSHVDQGVVSQSGNNVITCKIKSIRTITSSGGPMLNGCNSNNSNFSFTSPTAPSTKDVNPASNSSPLSDTSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKKGSPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECDKKNLSTPDELQAAIDGNRREGRRSSYGQYEAIHNQMPMQQMARQSLSGGLQQMSPLALVTHAAAANNPQAAAQAAAAAAHHRLMTAPAFAQMPNLMSHDFEQRMLEYLKLLQANKEQNVEAAASAISNSNGNGLTMTHSQQQSAQQHQSTSRQRSQSPDVSQHEAFNVLGMSRVALWQMVNNHASPPVSVNASLHGEGDSGGDVGNSNVKGGSEISGIKREHVTSPEQYGREDFFNHQPPPTKRANFYIPVAPNFQYKDNDSNGDPHPEPDEDDGEQNSTANSPPEDTNERPLNGVPGHLSGFQDMSNSVHHDKSDDSAIENSPSTSAASGATTQVSPVSTKKIHLSKQVHQTTDPSSDHPNDVKKLTACNSAFDLLSGLQFRVIRNDISTNGEHRLTVNLELNGVTYSGILNANISGATKTTKTESDIVDSNKNSDNDGNNVNCIGNHSASTTNAYASTFEQPKVVDPAIAEIASDTETPPKRPAAIVTSNGSTKASLNNTLISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00748001;
- 90% Identity
- iTF_00748001;
- 80% Identity
- -