Gbre007931.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- Aef1
- Assembly
- GCA_000671755.1
- Location
- Scaffold147:373241-378994[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0081 39 4.2 0.2 22 48 191 217 187 221 0.86 2 4 2.8e-05 0.13 12.1 0.0 21 51 218 248 214 249 0.88 3 4 0.0054 26 4.7 0.0 21 52 246 277 244 278 0.88 4 4 0.00014 0.67 9.8 0.1 21 47 274 300 271 307 0.88
Sequence Information
- Coding Sequence
- ATGCATATAAAAAGTTTGCAACATGCTCATGCTGCTGCTGCAGCGGCTTCAATGCCTAATTGCGAAATTGTTATTGTTTCTACATCACCCAACCataataataataataataataataacaatgataacagtggcactaatggtggtaacactcatcatcatcaacagcaacaacaacaacaacagcaccagcagcaacagcaacaaGGTTCCTCAGCTCCTACACCCTCAGAAATTCCATTACCATTTATGCATTtggctggtgtcagtgctgaagctcacgctgctgctcaggctgcagcaatggccgctgctcaggcggctgctGTTCAGGCAGCAGCGGCCGaacaacaacaacagcaacaacaaTCCAATGGTAGTGGAAATACGGCACCATCTGGCACAACTTTGGCTCACCATCATGCCATATTGCAACAGCATCAGCTGGCACATTTAGTGGCCACTGCGGCACACAGTCCCGCGCTTTCCGAACAGCATTTTATTGCCCGCGAAGCTAATACTTTGACAAATGGTCATAATAGTACGCCTACGCCCACAACGCCTGGACCTGAAAAACCATTTCAATGCAATGTCTGCGAAAGACGATTCCGCCAGTTGAGTACACTAACCAATcatgtaaagattcataccggagaaaaaccgtacaaatgtaatgtttgtgataaaacttttcgtcaatcgtccacattaacgaatcacctgaaaatacataccggcgagaagccattcaattgtACCTATTGCCCGAAAAATTTTCGTCAGTTAAGCACACTGACGAATCATTTAAAAATCCACACAGGTGAAAAACCATTTGAATGCGCCGTCTGTAAAAAACAATTTCGTCAATCGAGTACTCTTAATAATCACATAAAAATTCATGTTATGGATAAAGTTTATGTACCCGTTAAGATCAAAACTGAAGAGGAGGAAGGATGA
- Protein Sequence
- MHIKSLQHAHAAAAAASMPNCEIVIVSTSPNHNNNNNNNNNDNSGTNGGNTHHHQQQQQQQQHQQQQQQGSSAPTPSEIPLPFMHLAGVSAEAHAAAQAAAMAAAQAAAVQAAAAEQQQQQQQSNGSGNTAPSGTTLAHHHAILQQHQLAHLVATAAHSPALSEQHFIAREANTLTNGHNSTPTPTTPGPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00747719; iTF_00748648; iTF_00750118; iTF_00748491; iTF_00750892; iTF_00749357; iTF_00750735; iTF_00749212; iTF_00749952;
- 80% Identity
- iTF_00747719;