Basic Information

Insect: Glossina brevipalpis
Gene Symbol: L
Assembly: GCA_000671755.1
Location: Scaffold16:1800986-1814628[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.1e-05 0.0019 18.3 0.6 1 20 217 236 217 238 0.95

2 17 1.2 71 3.9 0.9 13 23 321 331 318 331 0.92

3 17 1e-05 0.00064 19.7 0.3 1 23 337 359 337 359 0.98

4 17 3.3 2e+02 2.5 2.0 2 23 424 447 423 447 0.88

5 17 0.0028 0.17 12.1 0.2 3 23 475 496 473 496 0.96

6 17 0.039 2.4 8.5 0.4 1 23 594 616 594 616 0.96

7 17 0.0026 0.16 12.2 0.8 2 23 624 645 623 645 0.96

8 17 4.8e-05 0.0029 17.7 0.5 1 23 653 677 653 677 0.93

9 17 0.14 8.4 6.8 0.0 1 19 682 700 682 702 0.96

10 17 0.0014 0.083 13.1 2.9 1 23 774 796 774 797 0.96

11 17 3 1.8e+02 2.6 0.9 1 23 952 976 952 976 0.89

12 17 0.00099 0.06 13.5 4.6 2 23 985 1007 984 1007 0.96

13 17 0.12 7 7.0 0.1 1 23 1013 1035 1013 1035 0.92

14 17 0.19 11 6.4 0.2 2 20 1043 1061 1042 1064 0.94

15 17 3.9 2.4e+02 2.2 0.6 2 23 1155 1176 1155 1176 0.93

16 17 0.00047 0.029 14.5 0.1 1 23 1186 1208 1186 1208 0.97

17 17 0.021 1.3 9.3 0.8 1 23 1215 1237 1215 1237 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.1e-05	0.0019	18.3	0.6	1	20	217	236	217	238	0.95
2	17	1.2	71	3.9	0.9	13	23	321	331	318	331	0.92
3	17	1e-05	0.00064	19.7	0.3	1	23	337	359	337	359	0.98
4	17	3.3	2e+02	2.5	2.0	2	23	424	447	423	447	0.88
5	17	0.0028	0.17	12.1	0.2	3	23	475	496	473	496	0.96
6	17	0.039	2.4	8.5	0.4	1	23	594	616	594	616	0.96
7	17	0.0026	0.16	12.2	0.8	2	23	624	645	623	645	0.96
8	17	4.8e-05	0.0029	17.7	0.5	1	23	653	677	653	677	0.93
9	17	0.14	8.4	6.8	0.0	1	19	682	700	682	702	0.96
10	17	0.0014	0.083	13.1	2.9	1	23	774	796	774	797	0.96
11	17	3	1.8e+02	2.6	0.9	1	23	952	976	952	976	0.89
12	17	0.00099	0.06	13.5	4.6	2	23	985	1007	984	1007	0.96
13	17	0.12	7	7.0	0.1	1	23	1013	1035	1013	1035	0.92
14	17	0.19	11	6.4	0.2	2	20	1043	1061	1042	1064	0.94
15	17	3.9	2.4e+02	2.2	0.6	2	23	1155	1176	1155	1176	0.93
16	17	0.00047	0.029	14.5	0.1	1	23	1186	1208	1186	1208	0.97
17	17	0.021	1.3	9.3	0.8	1	23	1215	1237	1215	1237	0.95

Sequence Information

Coding Sequence: ATGATGGCTTTAAAAATGTTATATCGAGGACCTAGTTCAAGACTTGAAAATCTAATAGAAAAAATTCAAGCCACTAAGGAAATTGTTAATGCTGATATGTACTCTACGCACACATCTTCCAGTTATTCGCCTTCAATATCGGACGGTACTCTTACACCGAATTCTTTACATCATCAACATCTTGGTGTTGTTTCGCACCTAACATCTATGTATTCACATAGCGAAGAAGATTCTGCCTTACAGACGCAACGTCTTTCTCAAACGCAAAAATCCAATGGTTGTTTAATGGATGGCGCTGACTATGAAGACAACGAAGAGAATTTACGTAAAAATAATGATACAAAAACAAACAGTGGAGGTACGCCAACTACAAATGCTGCCGACAATAATAATGGAGAACAACAACGCCAGCACCAACATTCCCATCATCAACAACTAAAACAGCGTCAGGGACGTCATCATCGTCATGCAGAGCATGTCATGAGAATTCCTACAAAATTACGAAAAATCGATAGGGATTCAGAAAGTTGCAGTGGCGTTGTTGGTGGTAATGGTGGCAGCGGTAACAGCAACAGTAACAATGCCAGTAAATTTGATAAGTTGACAAGCGATGGCATTAAACACAGTGGCAATACGGCCGACGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCACGTCTTGGTTACTTaaaaaaaCACGAGCAGGCAAGAGATGTATGTCCTCTACACAGAGCCATGCCGAGCATTTGCCTTTTAAATGCGAATATTGTGCTCGCCTTTTTAAGCATAAACGTTCACGAGATCGTCACACAAAACTGCATACCGGAGATCGACGTTATCGTTGCCCACACTGTGAGGCAGCTTTCTCCAGGAGGTAAGTTATCTTTAGTTGTATCGTTAGCAGTTACAATCAATAGCCTTCCGTTCTTCATCTTGTTTCAATGCCGCTTTGCTAGTGATCATCTGAAAATTCATATGAAAACACACGACAATCAGAAACCTTTTCAGTGTACAATTTGTAATAGAGGTTATAATACAGCGGCGGCTCTCACTTCTCATATGCAAAATCATAAAAAGCAAGCCGCTCTCTTGGCTGCCGGTGGTAATCCTCAGTCTCTTAACTATAGTCCGCGATCTACTGGTTCAGCTTCTAGTAATGGTAGTTTGCATAAACGCCGCTACAATCTCACAATTGAACCGGAAAGTAGTCCTAGTCGTGCTGATTTTCCTAAACGAGTACGCTGCCCGTCATCTAACTTTCTCAAGTGTACATTTTGTACGAAGTCCGATTTTGTTAATATGGAACAGCTGAATTCCCACATCCAGCATATGCATGAGAAAGAGTTAATCAATACAATGCCTCAAGCTACCACGAATACTGCGCTGCCCGCCGATGGCAACGGCTTCCAATTGGCCTGTGAGTACTGCACTATGAAATTTCCGAATATACCGACAATGTTTCAACATATGCGCACTATTCATATGGATCGTCTTGCAAGCCCAAATTCTTATTTCGAGCATTTAAATCGTTTGGCAGCGTCCGGCACATTCAGTCCACGTTTACTTACTAATCCACCTTTAAGGAGTTCTGCTAGCACCGAAGAGAATTCCATTAAGGAAGAAACTCAAACTAGTAGCCCTAAAACTTTAGAGAACGCGGCGAAAACCAATGAAGATGAACCTACAGATCTAAGCCAAAATAATAGACATCAGCAAACTCCTCCTTCAGCGTTGCAGGATCCTTCGCCAACAACTAGCGAAAAGCCGGGCGTTTATCTTTGCAATCAATGCAATGCCGGTTTGCCGAATTTCGATAGTTTTCGTAGTCATTTACAAACACATTTAGCTCAAAGTCTTAATTTAGTTTGCCATCATTGCGGCTTGGTATTGCGAGAATTATCCGACTATGAACGACATGTTATATCGCATTTTCTTATTACAAACTCCGAATATAATTGCCCGAGCAATTGTCAAAAGGCTTTTACAAAATCAGATGAGTTACAAAAACATTTAATCGATCAGCATGCAGTTACAGTTTATAAATGCGGCATATGCTCGGATATTTTTGATACCAAAGTGGCTTTGCAGGTCCATTTTGCTTGTACGCATGCGGAAGAAACTAAAATTTTTCGTTGCTCAGCTTGCATGGACGTTTTTCGCAATGAAAATGATTTCGGTTTACATGTGAAAACTCGTCATCAGGCCGTTAATCCGAATCCGGCTCCTGTCAATAACTTGCAATGCATGTTTTGCACCGCAGTGTGCTCATCGGATCTAGAAATGCAATTTCATTTAGCTGCTCATGCACGACAATTTCGTTGCCCGTCATGTCCGGAAACATTTCATGTTGAATTTCTTTTGGACAGACATATGCAAACTCATCATGGTGAACGTTCTCCAATCGCTCAAAAGGATGGTTTCGATGAAAGTTCCACCTCAACAGCGAGAAGTAACAGCTTGACCCCAATGAATTCTTTATACGTTAACGCTTTATTTGGTAAGGCGCCTTTAGTGCCTTTGGCGGCTCAGAATAATAATAACACAATTTTGGATTACAATATGGCCTTTGCTTCGCATATTAATAAAGGTTTGTTCCCTAATGTCGCTGCTCAAAAATTTTATAATCCTTTGCAAATCGATACAAATGCCATGAAACACTCAGCCTTAATGTATGGGTTAAGCCAACGTTACTTTGATACAAATCGATCGGTTATAGACCTATATAATCAGAATCACACGGAAAAGAATACATTAGCGGGAAGTTATTTTATTAGCCCGAAACAACCAACAAATTCAGAAGTACTTAACCGTCCCGAATTGCCAGCGTCACCTTTAAGCTCTGCCGGATTTAGTTGTGGTATATGCGAGCGCAATGACTTTCGCACGGAATCCGAAGTACACTCACACCGTAAAATTGTTCATAATTTAAAAACTGGAGTCAGTCTACGTTGTGCTTATTGTTCCGGTAATTTTAAATCTCGCAGTGAACTAGAACATCATATGAAAACTTGTCACAATTCTACTGGTAAACATAAATGTTTGATATGCGACGAAATCTTTCCTTCACCTGCCATATTGGCGGAGCATAAGTTGCAACATTCAAAGGTAGGGCAATCAGGCAAATGTTCACATTGTTCGAAAGTTTTACCTGATGTAGCAGCTTTTAAAGCTCATCTACCCGAACATAATAACGAAGGTCAAATGCCAGTACAATGCATATGCTGCCGACAGACTCTACATTCTGAGTTCGAAGTTGGATTGCACGCCAAATTTCATGTAAAGTCATCACAAGTAACCGAGAATGTTTGCGCTTTATGTTTAGAACCTATAACTCCTGGTTCTCCGACGGAAGCTAAAGTTTGTGAGAAATGTTGCCGTAAACATAATCTAAATAATAAATTCAAGCAGCCGGAAAACTTTGAACGGCCGTCCATTCATCGTCAATATGTTGAAAATCGCTGCAATCTTTGCAAAATGATTTTGCCTCATGTCCAAAAATTGCAAGAACACTTAGTAGAGCATACTTTCGCCGGTTGCGAAGATCGTGGATTTAATTGTTATATTTGCTCGGCTGTGTTTACTGTACCCAGTGGTTTACTTAATCACATGAACGATCATGGTTTAAATGCTCGCCCATACGATTGTAATTTATGTCCTGAGAAGTTCTTTTTTCGAGCCGAACTTGATCATCATTTAATCGATCATGATTTGCGTGATAAAGGAAGCATAAAAAGTGAATTGGATCGAGCTCCAATAAATGATGGTAAAAACGTTACGGCAAAAATTTGCACAACAGCCAAACCAGAAGTTCCTTTAAAGCTTACAGAAGTTAAACAAGAAATTATAGATACGGAAGAAGCAGTTAATGCAAACGAAGACGATGAGTATATAGAAGTGGAAAAAATCAATGAGACAACAAATGCACTTAACGTAGCAGTGGAGGTAAGAAAGCGAGAGAAATCAGATTCGGAAAATTCATCAGATGAGAAGTAA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATKEIVNADMYSTHTSSSYSPSISDGTLTPNSLHHQHLGVVSHLTSMYSHSEEDSALQTQRLSQTQKSNGCLMDGADYEDNEENLRKNNDTKTNSGGTPTTNAADNNNGEQQRQHQHSHHQQLKQRQGRHHRHAEHVMRIPTKLRKIDRDSESCSGVVGGNGGSGNSNSNNASKFDKLTSDGIKHSGNTADGSYQCQFCDKSFPRLGYLKKHEQARDVCPLHRAMPSICLLNANIVLAFLSINVHEIVTQNCIPEIDVIVAHTVRQLSPGGKLSLVVSLAVTINSLPFFILFQCRFASDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPQSLNYSPRSTGSASSNGSLHKRRYNLTIEPESSPSRADFPKRVRCPSSNFLKCTFCTKSDFVNMEQLNSHIQHMHEKELINTMPQATTNTALPADGNGFQLACEYCTMKFPNIPTMFQHMRTIHMDRLASPNSYFEHLNRLAASGTFSPRLLTNPPLRSSASTEENSIKEETQTSSPKTLENAAKTNEDEPTDLSQNNRHQQTPPSALQDPSPTTSEKPGVYLCNQCNAGLPNFDSFRSHLQTHLAQSLNLVCHHCGLVLRELSDYERHVISHFLITNSEYNCPSNCQKAFTKSDELQKHLIDQHAVTVYKCGICSDIFDTKVALQVHFACTHAEETKIFRCSACMDVFRNENDFGLHVKTRHQAVNPNPAPVNNLQCMFCTAVCSSDLEMQFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGERSPIAQKDGFDESSTSTARSNSLTPMNSLYVNALFGKAPLVPLAAQNNNNTILDYNMAFASHINKGLFPNVAAQKFYNPLQIDTNAMKHSALMYGLSQRYFDTNRSVIDLYNQNHTEKNTLAGSYFISPKQPTNSEVLNRPELPASPLSSAGFSCGICERNDFRTESEVHSHRKIVHNLKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKVLPDVAAFKAHLPEHNNEGQMPVQCICCRQTLHSEFEVGLHAKFHVKSSQVTENVCALCLEPITPGSPTEAKVCEKCCRKHNLNNKFKQPENFERPSIHRQYVENRCNLCKMILPHVQKLQEHLVEHTFAGCEDRGFNCYICSAVFTVPSGLLNHMNDHGLNARPYDCNLCPEKFFFRAELDHHLIDHDLRDKGSIKSELDRAPINDGKNVTAKICTTAKPEVPLKLTEVKQEIIDTEEAVNANEDDEYIEVEKINETTNALNVAVEVRKREKSDSENSSDEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746926;
90% Identity: -
80% Identity: -