Basic Information

Insect: Glossina austeni
Gene Symbol: -
Assembly: GCA_000688735.1
Location: Scaffold350:12476-18221[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.003 0.23 12.1 0.3 3 23 33 53 31 53 0.96

2 16 0.0051 0.39 11.4 3.1 1 23 59 82 59 82 0.96

3 16 0.24 18 6.2 0.2 3 23 87 109 85 109 0.89

4 16 0.005 0.38 11.4 0.2 1 22 117 138 117 138 0.95

5 16 9e-06 0.00068 20.1 2.0 1 23 146 168 146 168 0.97

6 16 0.00019 0.015 15.9 3.2 1 23 174 196 174 196 0.98

7 16 2e-05 0.0015 19.0 3.9 1 23 202 224 202 224 0.96

8 16 3.4 2.6e+02 2.5 0.4 2 23 648 670 647 670 0.93

9 16 0.091 6.9 7.5 1.2 1 23 694 716 694 716 0.89

10 16 6.1 4.6e+02 1.7 3.4 1 23 724 748 724 748 0.90

11 16 3.4 2.6e+02 2.5 1.1 3 23 754 775 754 775 0.92

12 16 0.0091 0.69 10.6 0.3 1 21 790 810 790 811 0.94

13 16 0.00016 0.012 16.1 0.9 1 23 819 841 819 841 0.98

14 16 0.00013 0.01 16.4 2.6 1 23 847 870 847 870 0.97

15 16 3.5e-05 0.0027 18.2 1.2 1 23 876 898 876 898 0.98

16 16 0.0012 0.088 13.4 1.1 1 21 904 924 904 925 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.003	0.23	12.1	0.3	3	23	33	53	31	53	0.96
2	16	0.0051	0.39	11.4	3.1	1	23	59	82	59	82	0.96
3	16	0.24	18	6.2	0.2	3	23	87	109	85	109	0.89
4	16	0.005	0.38	11.4	0.2	1	22	117	138	117	138	0.95
5	16	9e-06	0.00068	20.1	2.0	1	23	146	168	146	168	0.97
6	16	0.00019	0.015	15.9	3.2	1	23	174	196	174	196	0.98
7	16	2e-05	0.0015	19.0	3.9	1	23	202	224	202	224	0.96
8	16	3.4	2.6e+02	2.5	0.4	2	23	648	670	647	670	0.93
9	16	0.091	6.9	7.5	1.2	1	23	694	716	694	716	0.89
10	16	6.1	4.6e+02	1.7	3.4	1	23	724	748	724	748	0.90
11	16	3.4	2.6e+02	2.5	1.1	3	23	754	775	754	775	0.92
12	16	0.0091	0.69	10.6	0.3	1	21	790	810	790	811	0.94
13	16	0.00016	0.012	16.1	0.9	1	23	819	841	819	841	0.98
14	16	0.00013	0.01	16.4	2.6	1	23	847	870	847	870	0.97
15	16	3.5e-05	0.0027	18.2	1.2	1	23	876	898	876	898	0.98
16	16	0.0012	0.088	13.4	1.1	1	21	904	924	904	925	0.92

Sequence Information

Coding Sequence: ATGAGCAATTCCACACTTACCAACGGACCCAACGTCACCGGAAATCAACCAATGTTAGTAAAACTCTCCACTGGTGATGGTGTCCCAAAACTTTTTTGTCCCATTTGCAATAAAGCTTTGACTTCCCTAAATGGTTACGTGAAACATGTTAAAAAACATGAATCTCCTGGTGGCtttttttGCCGCTATTGCGAAGCACGCTTTTGCACGGATGAGGATTTAAAGAGACATCGTGATACGATTCATGTGACGATTGCATGTCGCCTCTGCAAAAATACAACGTTTACTAATGAAGGGGAATATCGAATCCACATACGCGATGTACATAAAGGCGTTGATCGCGAATTATTTAAGTGTGATAAATGTGGAGCTGAATATAAGACAATTGATCCGTATCGGCGACATATATCTACTGAATGCGGTACCAAAAAACCCTATAAATGTGAACAATGCTCAATGACGTTTGTAACTAAATATAATCTGAAACAGCATATAGAATTTCATACAGGGGAGTTGAAATATTGTTGCAGTTATTGTGGTAAAAATTTCTATCAGAAGGGCCGCTTAGTAGAGCATGAAAGGTCGCATACTGGGGAGAAGCCTTACAAATGCGATGTTTGTGGCAAATGTTTTTCGCATCGTGAAAGTTTAGTTACTCATTCAACAGTACACACCGGCATCCGTTTGGTAGAATGCAGATGCTGTCAATCCCGTTTCTCATGTTATTCTAATCTCATCAAACATCGACGCACTCGACCTGACACCTGTGGCCTTCCCGACTACGACCCACCAAAAAATCGTGTTCGCAAGTTCACTTCAAGAATTCCTGCGACACTTAATCCCACCTCAGAAATAAAAGTTAGCAATGTTAATAAAATTATCAAGCCCGACGATCAAGAGAAAATTGCTTCGCaaaaaaaaGAGAACGATAGCAAACCCAAGTCCAAAATCGTCGGGGGAAGCCGTAAAGAAGGCTTAAACAAAAAAGTTACGAGAAAAGCTAAACTTAGCGGTGATACTGAAAATATGGAATCCTCAGATATTACCGAAGAAGAAGACAATGAAACGGACAAATTaaaaaaaTTATTAAGATCCAAATCaaaaaaaaGTTGCACTCTTAAGCTAAAGTGTTCTGATCATGATGATAATAACGATGATGATAATGATTTGGTAAATTTTGAGCCTGATGAAAGTGACGTGGACGAAGATAATGGAGACTTCAAGCTACCCGCCCCCACAACAAAGAAAGAAGAAATTAAAAAAGAAACCTTGGAAGAGGAACTTAGCAACAAAATAACGCTGCAAATTCAACCTTTTGAAGATTTTGAGTATTCAACGTTAGCTACAGACAACGCGAATGTTAAGTCAGAAGATGAGGAGGAGAAAAACAGAATGTTAGAATGCTTAAACTTTTTCAGTGAATGTGATTACCCGGTACTAGACGATGATGTTCCTTTAAGGAATTACCAGaaaaaaaaGGTACCTTTTAAATATCAACTGGCCGAAAATGTTATAGATGATATTTTAGAAGAAACCGAACTAATATTGATTAAAGATGAAGACGGTAATCAAACTACAACCTTTGAAGAAGATATACTGGAAGTCAAGCCGGCGATTTCAAGCTCCGAAACGCACTCTTGCAAAGTCCTCTTAGAAGATGTTACCAAACACTATCCCCAGCTTAAAGGGAACAACACGGTAAAATTATCTCGCAACGCTTTTAAAGCAGGGCCTAAATGTAAAAAATTGCAAAAGTCCATAAAATCAACTTCTGTTACAAGCAAATATAAAACAAAAGGGATACGTCGAAGTAGCCACATTTCTTTAAAAAACGATGTCAATGAAAAGGAACAGAAAAGGAAAACATTCCGCCTATCAAAAATATCTCAGAAAGAGCTTAAAGAACGTCTTAAAATGGCTAAAAAACAAGAGAAAAGTTGGCAATGTTTGTATTGCATTAAAATCTATTACATGCGCAAGCCCTATGAAAAACATTTGCGGGATGACCACAAACGATCTGAGGAAGAAATACGAGAAATATTTAAATCCGAAGATACAGGCTTATGCAATGAGGATGTCTTCAAGTGCCATATATGCGATAAAATTTATTTAATGGAAAAACGTTTAGTCGATCACATTGAAAAGCATGGCGCCGATGGTAATTTAATACACAAATGCCCCTGCTTTTGTAGCCTGTACTTTGCAACCCGTGAAGAAGCTATTAAGCATGCGCACGAGGTCCATAAGGATTTATTGTGGTGTGAGATTTGCCAAAAATTCATGACCGGTTGTGATGCGTTGAAATCTCATAACGCTCGCGTGCACGGTCAGACCACGAAGGAAGCTCAAATCAATAGTAAAAGAAATTTTGTGTGCGATAAATGTGGGAGAAAATTTTTAGGTCGCACTCAACTAACTGATCACGTACGTTCCGACTGCGGCCGTCTACCAATATATCAATGTCAGGAATGCGGCAAATGTCTTACGACAGCTGGGATTTTAAAAACCCATATGTTGCTACATAAAGCAGAACGGCCTTATCAGTGCGATCAGTGCAGCAAAACGTTTAAAATAAAGGCACAATACAAGGCGCATCTTAAGTACCGACATTCGGATGAAAAACACTTCAAGTGTCACCTTTGCCCTAAAGCCTATCCTTACCGTGAGAGTTTATTGACTCACATGACGGTGCATACCGGGATTAAACGTTTTCTCTGCAATGGTTGTGGAAAACGCTTCACTTGTGTGTCGAATTTGCAAGCACACCGCAAGGTTCAAGCAGACACCTGCGGCCTGTTACCGTTAAATGCCAAGGCTACTCAATATATGGGTGTCCAAAAAGGTAATTTGCTAATGGGAGCGAAACCGGAAGCGGGCCTAGATTACATAGAAACTAATACTTTAGTCGCAAAAGATGTGCTAAATCAAGATCAACCAATGGCTCAGGAACTAAATAATGGGCCATCAGACAGTTCCTTACCGTTGGCGACGGCTCCATTACATTATGCTCATTCAGCCCCACCAGCATTAATAATGCCCACTTTAATAATACAGGATTCTCATCAGTCGTGGAGCAATTACAACTAA
Protein Sequence: MSNSTLTNGPNVTGNQPMLVKLSTGDGVPKLFCPICNKALTSLNGYVKHVKKHESPGGFFCRYCEARFCTDEDLKRHRDTIHVTIACRLCKNTTFTNEGEYRIHIRDVHKGVDRELFKCDKCGAEYKTIDPYRRHISTECGTKKPYKCEQCSMTFVTKYNLKQHIEFHTGELKYCCSYCGKNFYQKGRLVEHERSHTGEKPYKCDVCGKCFSHRESLVTHSTVHTGIRLVECRCCQSRFSCYSNLIKHRRTRPDTCGLPDYDPPKNRVRKFTSRIPATLNPTSEIKVSNVNKIIKPDDQEKIASQKKENDSKPKSKIVGGSRKEGLNKKVTRKAKLSGDTENMESSDITEEEDNETDKLKKLLRSKSKKSCTLKLKCSDHDDNNDDDNDLVNFEPDESDVDEDNGDFKLPAPTTKKEEIKKETLEEELSNKITLQIQPFEDFEYSTLATDNANVKSEDEEEKNRMLECLNFFSECDYPVLDDDVPLRNYQKKKVPFKYQLAENVIDDILEETELILIKDEDGNQTTTFEEDILEVKPAISSSETHSCKVLLEDVTKHYPQLKGNNTVKLSRNAFKAGPKCKKLQKSIKSTSVTSKYKTKGIRRSSHISLKNDVNEKEQKRKTFRLSKISQKELKERLKMAKKQEKSWQCLYCIKIYYMRKPYEKHLRDDHKRSEEEIREIFKSEDTGLCNEDVFKCHICDKIYLMEKRLVDHIEKHGADGNLIHKCPCFCSLYFATREEAIKHAHEVHKDLLWCEICQKFMTGCDALKSHNARVHGQTTKEAQINSKRNFVCDKCGRKFLGRTQLTDHVRSDCGRLPIYQCQECGKCLTTAGILKTHMLLHKAERPYQCDQCSKTFKIKAQYKAHLKYRHSDEKHFKCHLCPKAYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCVSNLQAHRKVQADTCGLLPLNAKATQYMGVQKGNLLMGAKPEAGLDYIETNTLVAKDVLNQDQPMAQELNNGPSDSSLPLATAPLHYAHSAPPALIMPTLIIQDSHQSWSNYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00747668;
90% Identity: iTF_00749163; iTF_00749900; iTF_00748436; iTF_00750686;
80% Identity: -