Basic Information

Insect: Glossina austeni
Gene Symbol: -
Assembly: GCA_000688735.1
Location: Scaffold13:1978232-1981602[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.083 6.3 7.6 2.3 1 23 34 57 34 57 0.93

2 19 0.04 3 8.6 8.7 1 23 147 169 147 169 0.96

3 19 0.00038 0.029 14.9 0.7 1 23 175 197 175 197 0.98

4 19 0.00022 0.016 15.7 2.4 1 23 211 233 211 233 0.96

5 19 0.0011 0.08 13.6 4.7 1 23 239 261 239 261 0.99

6 19 3.5 2.6e+02 2.5 2.2 1 23 267 289 267 289 0.96

7 19 7.4e-07 5.6e-05 23.5 1.0 1 23 295 318 295 318 0.96

8 19 3.5e-06 0.00027 21.3 1.3 1 23 324 347 324 347 0.94

9 19 5.2 4e+02 1.9 4.0 1 23 354 376 354 376 0.84

10 19 0.0046 0.35 11.5 0.2 1 14 381 394 381 395 0.93

11 19 5.2e-05 0.004 17.7 2.3 1 20 396 415 396 418 0.92

12 19 0.055 4.1 8.2 1.7 1 23 424 446 424 446 0.94

13 19 0.021 1.6 9.4 4.8 1 23 460 482 460 482 0.96

14 19 0.0017 0.13 12.9 4.4 1 23 488 510 488 510 0.99

15 19 6 4.5e+02 1.7 3.9 1 23 516 538 516 538 0.93

16 19 8e-06 0.0006 20.2 0.7 1 23 544 567 544 567 0.96

17 19 9.2e-07 6.9e-05 23.2 1.4 1 23 573 596 573 596 0.96

18 19 0.01 0.79 10.4 0.3 1 23 603 625 603 625 0.96

19 19 1.5e-06 0.00011 22.5 1.3 1 23 630 652 630 652 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.083	6.3	7.6	2.3	1	23	34	57	34	57	0.93
2	19	0.04	3	8.6	8.7	1	23	147	169	147	169	0.96
3	19	0.00038	0.029	14.9	0.7	1	23	175	197	175	197	0.98
4	19	0.00022	0.016	15.7	2.4	1	23	211	233	211	233	0.96
5	19	0.0011	0.08	13.6	4.7	1	23	239	261	239	261	0.99
6	19	3.5	2.6e+02	2.5	2.2	1	23	267	289	267	289	0.96
7	19	7.4e-07	5.6e-05	23.5	1.0	1	23	295	318	295	318	0.96
8	19	3.5e-06	0.00027	21.3	1.3	1	23	324	347	324	347	0.94
9	19	5.2	4e+02	1.9	4.0	1	23	354	376	354	376	0.84
10	19	0.0046	0.35	11.5	0.2	1	14	381	394	381	395	0.93
11	19	5.2e-05	0.004	17.7	2.3	1	20	396	415	396	418	0.92
12	19	0.055	4.1	8.2	1.7	1	23	424	446	424	446	0.94
13	19	0.021	1.6	9.4	4.8	1	23	460	482	460	482	0.96
14	19	0.0017	0.13	12.9	4.4	1	23	488	510	488	510	0.99
15	19	6	4.5e+02	1.7	3.9	1	23	516	538	516	538	0.93
16	19	8e-06	0.0006	20.2	0.7	1	23	544	567	544	567	0.96
17	19	9.2e-07	6.9e-05	23.2	1.4	1	23	573	596	573	596	0.96
18	19	0.01	0.79	10.4	0.3	1	23	603	625	603	625	0.96
19	19	1.5e-06	0.00011	22.5	1.3	1	23	630	652	630	652	0.99

Sequence Information

Coding Sequence: ATGGGAGAATTTGAAGAATTGGAGAATAGTAAAGTGCTTTTACAAAAATGTGGAGAAATATTCTACGATACTTTGACGGTTTCAGATGTAAATGTGAGTTTTCAGTGCATTTTTTGTCAGAAAACTTTTACGAAACTAGATGCGTTCCTAGAGCATTTTCAAAGCAAACATTGCAAAGCATCCACTCCTGTAGAAGAGTTTTGTTTGTTGAGTGATTTTGAAGATGTTGAAGAAGAGAAAGAAATTTTGCTTACAACAGAAGAAGATGCCAATGTATCAGGTAAAGATGAAGATTCGATTTCTCAACTGGAATTCATTTTGGAAAGTGCTGAAGGGGAGATGATTAGTGATCATGACTCCAATGTATTATTACCAGATGAAAATGAGAAAATTGCTGCGCATTCTGAACCACAGGCTGAAAATAGTAAACCTGGGGAACACAATTGTCCCCATTGCTGTAAAGTATTCAAAAGAACTTGGGATTTGAAGCAACATTTGCACATACACGATGGAGTGAAGCCTTACAAATGTGAGCACTGCCCAGCTTCATTTGCTTGGAAGTCAGGTCTTAGAGTTCACGAGAAGCGTCACAAAGGCGAAAAGCCATTTATATGGCGTAAACGGGGAGAACACAATTGTCCTCAATGTTCTAAAATATTCAAGAAAGCTTGGGATTTAAAAGAACACTTACATATACACGATGGACTGAAGCCGTATAAATGCGAGCACTGCTCGGCTTCCTTCGCTTGCAAATCAAATCTCAGAGCCCATGAGAAGCGCCATGATGGTGAAAGACCCTTCATGTGCCAGTTTTGTTCAAATAGTTTTCTCTCCGCCAAGCAAAGGAGATTGCATGAACGTAGTCATACCGGCGAGCGACCTTTTGTTTGCGAATTCTGTGGTAAAAGTTTTTCCTCCTCGTCAGGCTTACAGAGCCATCGTAGTAGTCAGCATTTAAAGGAACGCAATTTTATCTGTGGCAAATGTGATAAACGCTTCAACAGACGCAGTCAATTAAGATTGCATCAAGCAAATATGCACACAGAAAAGCCGCGTACCCATGTTTGCACGATCTGTAAAGCGGCGTTTAAAGATATATGTGTTTTAAAATGTCACCTTACTATTCACAAAGAAAAAACTTATCAATGTTTAGAGTGTGGCAAAAAGTTTGCCAATAATTCCGAGCATATATGTCCCCATTGCCGTAAAGTATTTAAAAGAACCTGGAATTTAAAGCAGCATTTACCCATACATGACGCCATGAAGCCTTATAAATGCGAGCACTGCCCAGCTTCCTTTGTATGGAAATCAGGTCTTAAATTTCACGAGAAGCGCCATAAGGGTGAAAAACCATTTATATGGCGTAAACGTGGGGAACACAATTGTCCCCAATGTTGTAAAGTATTTAAGAAAGCATGGGATTTAAAGGAACATTTACATATACACGATGGGCTGAAGCCATACAAATGCGGACATTGCTCGGCGTCGTTTGCCTGCAAATCAAATCTTAGAGCTCACGAAAAGCGCCATGATGGCGAAAGACCATTCGTATGCCAGTTTTGTTCAAATAGTTTTCCCTCCGCCAAGCAAAAAAGATGTCACGAACGTAGTCATACCGGCGAGCGACCTTTTGTTTGTGAGTTTTGTGGCAAAAGTTTTCCTTTTTCGTCGGGCTTACAAAGTCATCGTAGTAGTCAGCATTTAAAAGAGCGAAATTTTATATGTGGGAAATGTGACAAACGTTTTAATAGACCAAGTCAGTTACGATTGCACCAGAAAAATATGCACACTGAAAAGCCGCGAACCCATGTCTGTACAATCTGTAAAGCAGCTTTCAAAGATATATATGTTTTAAAAGGTCATCTTACTATTCACAAGGAGAAAACATATCAATGCTTAGAGTGTGGAAAAAAGTTTGCTAATAATTCCGGTTTATATTCGCATCGAAAAAGACATGAAAAACAAAGAGACAGATTATTAGCAGATATATTGGAGCAAGGAGGCTTAAAATGA
Protein Sequence: MGEFEELENSKVLLQKCGEIFYDTLTVSDVNVSFQCIFCQKTFTKLDAFLEHFQSKHCKASTPVEEFCLLSDFEDVEEEKEILLTTEEDANVSGKDEDSISQLEFILESAEGEMISDHDSNVLLPDENEKIAAHSEPQAENSKPGEHNCPHCCKVFKRTWDLKQHLHIHDGVKPYKCEHCPASFAWKSGLRVHEKRHKGEKPFIWRKRGEHNCPQCSKIFKKAWDLKEHLHIHDGLKPYKCEHCSASFACKSNLRAHEKRHDGERPFMCQFCSNSFLSAKQRRLHERSHTGERPFVCEFCGKSFSSSSGLQSHRSSQHLKERNFICGKCDKRFNRRSQLRLHQANMHTEKPRTHVCTICKAAFKDICVLKCHLTIHKEKTYQCLECGKKFANNSEHICPHCRKVFKRTWNLKQHLPIHDAMKPYKCEHCPASFVWKSGLKFHEKRHKGEKPFIWRKRGEHNCPQCCKVFKKAWDLKEHLHIHDGLKPYKCGHCSASFACKSNLRAHEKRHDGERPFVCQFCSNSFPSAKQKRCHERSHTGERPFVCEFCGKSFPFSSGLQSHRSSQHLKERNFICGKCDKRFNRPSQLRLHQKNMHTEKPRTHVCTICKAAFKDIYVLKGHLTIHKEKTYQCLECGKKFANNSGLYSHRKRHEKQRDRLLADILEQGGLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00749869;
90% Identity: iTF_00749869;
80% Identity: -