Gaus006996.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossina austeni
Gene Symbol
-
Assembly
GCA_000688735.1
Location
Scaffold395:41430-47289[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 2.2e-06 0.00016 22.0 0.8 3 23 212 232 211 232 0.98
2 24 5e-06 0.00038 20.9 0.5 1 23 333 355 333 355 0.94
3 24 0.0014 0.1 13.2 1.5 1 23 361 383 361 383 0.98
4 24 1.1e-05 0.00085 19.8 0.3 1 23 401 423 401 423 0.99
5 24 0.033 2.5 8.8 0.2 1 23 432 455 432 455 0.95
6 24 0.0016 0.12 12.9 4.8 1 23 461 483 461 483 0.98
7 24 0.00017 0.013 16.1 0.3 2 23 490 511 489 511 0.97
8 24 2.5e-08 1.9e-06 28.1 0.7 1 23 517 539 517 539 0.96
9 24 0.0094 0.71 10.6 0.9 1 23 545 567 545 567 0.98
10 24 0.00043 0.033 14.8 3.0 1 23 573 595 573 595 0.96
11 24 7.6e-05 0.0057 17.2 3.7 1 23 601 623 601 623 0.98
12 24 2.5e-06 0.00019 21.8 0.7 1 23 629 651 629 651 0.99
13 24 0.00014 0.011 16.3 1.0 1 23 824 847 824 847 0.98
14 24 0.69 52 4.7 5.1 2 23 913 934 912 934 0.96
15 24 0.00069 0.053 14.1 5.4 1 23 940 963 940 963 0.96
16 24 0.026 1.9 9.2 4.5 1 23 987 1010 987 1010 0.96
17 24 0.00031 0.023 15.2 0.4 1 21 1016 1036 1016 1036 0.96
18 24 1.3 96 3.9 0.5 10 23 1038 1051 1037 1051 0.93
19 24 6.3e-08 4.8e-06 26.8 1.5 1 23 1057 1079 1057 1079 0.96
20 24 0.032 2.4 8.9 2.9 1 23 1085 1107 1085 1107 0.96
21 24 3.5e-05 0.0026 18.2 1.3 1 23 1113 1135 1113 1135 0.97
22 24 1.8e-06 0.00014 22.2 0.6 1 23 1141 1163 1141 1163 0.99
23 24 3.7e-07 2.8e-05 24.4 1.3 1 23 1169 1191 1169 1191 0.99
24 24 4.2e-05 0.0032 18.0 1.6 1 23 1197 1219 1197 1219 0.97

Sequence Information

Coding Sequence
ATGGCTTTGGATTTTACATTAATGTGTCGCACTTGCTTGAGTGAAAATAATGTGTATCACAAATTACAAGATGCCCCCTTGGAAAACTATAAAATTTTGGAAATGTTAACAGCGTTGGTGCCGCAGTTAAATATTGATAAAGAAGATCTCACTTTCCCGGTTTTAGTGTGTGACTCTTGTGTGGATCAACTGCTAAAAGCATTTAAATTTCAGCAACAATGCTTGCAAAGTAATAAAATTTTTATGACTCTGGTGGCAAATAATCCCAGCACTACCACCAACGCGGCTACTGGAGTAGTGGTTTTAAATTGTAATAAAATGAAAATGGAGGTGGAAGACGATATCCATTTGCCAGAGAACAATAACTTTAAAGTAGAAATGGATATTGGGGAAGAGGCGAAACAAGAAAATTTTCCAAGTGAGATGAATCCCCAAGAAATAGAGATGGTCCTAAATGCTAACAGTGTTGATTGGTTTCATAATAATGATAGCGTCGAAGACGATGCTTTTAGTGCTAAAGATATTTTAGACATTTCATCTAAAGATAAGGATACAAGTATCGAAACTATTGCTAGTAAACTTAGAGCTCTAGAACGAGCTAACCATAAGGATGCACAAACTGCGAAGCTATTATGTCCCCAGTGTCCGAAAACGTTTAAGACTCAAAAGCTTTTAAATAAACATATTGCTCGACATGCTAACAAACTCCCCAAGATGAAAACAACTACAAGAAAAAAGAATAGTTTAGATAAGAAATTAAAAACAGACACAATTGGAGACGTTGAAAAAATTAGAATAAAAACGGATACTGACGATGCTGCGGCGAATATACTGGAGAAAGGTCAAGATGGGAAAGATGCAAAGAACCAAGAAAACGAAAATCCCACTAATGAAGTAAAATCAGAAATTATACATGATGATGATAACAAGGATTTTATAGATACTGGCATTGGCGAGATAGAGAAACCGAACAGCAATAATCGTCGTAATGGTTGTTATCAATGTCAAGAATGTGGTAAAGTATTCGATCGCCCGTATCGTTTAAAACGCCATAGCGGGGTTCACTCTTTAGAGCGTCCTTATCAATGTGAACAATGCAAATATCGATTTTTAACCCAGGCTTTGTTGAAAGCCCATAAACAAATGCATGACAATGAAAAGAGAGGTATTCAAATTACCCACCCCACCCCTATTAATGGCTTCAAATGCCCCGACTGTCCTAGACGCTTTGAAAAGCAAGCCTCTATGGCGGCTCATCGGCAAACACATACGCGTAATGCTGGTTTGGCTAGTTATCCATGTCCGGCTTGTGAACGCAAGTTTATGAAAATTCGCTCTTTGGCAGAACACATGTCAAATAAACATCCGGAAATAGAAAAACACCAGTGTAATCAATGTGAGAAATCATTTGTTCTACATGCTCATCTAGTTGAGCATTTAAATCGACATATGGGTAACAAAAATCTTGTTTGCCTGGTATGTGAGAAAGAGTTTAGTTATGGCAATACCCTAAAGGAGCATATGCGTACGCACAGCGGTGAAAGCCCTTACTTATGTCCCCAGTGCGGTAAAACTTTTCGCAGTGCTAGTAATCTACGTCAGCATATGGAACGTCATGGTAATGAGAAACGTTATCAGTGCCCAGAATGCCCAAGTCGTTTTGCCTGCCAATCGGATCGCATTAAACACATGTCGATACACACTAATCACAAACCACACGTCTGTGATTTATGTGGTTCAAGATTTACACGCTCCTACTCTTTGTCCAAACACAAACAATTACATACCGGCGAAAGGCCTCACAAATGTGATCAATGTAATATGGCATTTGCTATAGTTTATCACCTTCGCCGACATATGCGTACACATACCGGTGAAAAACCATATAAATGTAAATATTGTGAGCGCGCCTATGCCGAAAGTGGTGATTTAACCAAGCATTTGCGCACTCACGTAGGAGAAAACACTTACATAGCTCAAACATATTACAGTTTACAAGATACAATTGTCCGCATAAAGGATGACGAGAATCTATCATTACAAGTGATGCTAGAACAAATTATAATAGATTGTAAAACGTTGCCGGAAGATTTAAAGATGCCAGAAGAAATTTGTGAGTTATGTATGGAGCAATTAAAAATTTGCTTCAAATTTCAACAGCTTTACAGACATACAAATGAGCAACTGTTGAGAATATGGGAACAAATGCGAACTTCTTCAATTACAGTTAGCGACGCTATCGAAACTGTTAAAAGCCAAGAAACTGGAACAATTGATTTAATTGAAGAAGAGTTTCGGCAAATTCAACAATCAAAAAATATTATATTTGATATAAATTCTCATAATTCAAGTATGGAATGTAATATAACGCATTCTGGGCACAATGGCTGTCTTAATTGTAATGTTGTTACAGTTACTAAAACTCATCAATTTTTCAGGCATAACAAACAGCAATCATTAGAGAATAATTTTGTATGTAAAATTTGTTTATACCGTTATACTACAAACACTCTGCTTGAGGAACACATACGAAAAACGCATCAACCAAGGATTTTATTGAAAATAATAGATTTGAAAAGATTTTGGAATAAAGAATTATTGGAAGAGCAACGTGAGGGAATATCAAGTATAATTAGTGAAAATGTGGAAAGCTTGGAAAAGTCGTCAGGAAGTAATGAATACGAATCAGACAATAACGATACGAACGATTATTTGACATCATATAAACCATTACTTTCATGTACCGAATGCAGAGCTACGTTTAAAACTGCAAAACGTTTAAAGTGCCATaaaaaaaCTCACGTGAAATGCTATCGTTTTGTTTGTCACGTATGTGATCATCGATTTAAATTTCCTCATCTTTTAAAACAACATCTGATCAAAGTGCATGCGCAATTCCCTAACAATAAAAATAGTAATGGATCAGTTGATAAATTAACGGTTGAGAAGCAAGTGCAATTCCATTGCAATTACTGCAAATGTGCTTATAATTCGGTAGGCAGTTTGGCACAGCACATGAGTAAGAAACATCCGACCATAAAACCATTCAGATGCGATAAATGCGATAAAGCGTTTGTAGTGGAAGAACACTTTAAAATCCACATAAATCCATTTTCTTTTAAATTTGCGATGAAACAGCATATGCGTATGCATACAGAACCAGCACCTTATTTGTGCACGCTGTGCGGTAAAACTTTTTATCGTCCCAGTAATTTACGTCAACACATGCAACGGCACGGCGAAGATAAACCTTACGCCTGTCCGCATTGTCCTAGACGTTTCAAATGCCCTTCAGATCGTTACATACATTTAATGTCGCATAATGCGGGTAAAGTGCATGTTTGCTCAATATGCGGTAGTCGTTTTTCACGTCTCGATACCCTAAACAATCATCAGATGTTACATTCCGGCAAAAAGCCCTACAAATGCGATCAATGTTCTATGGCCTTTGCTTCTCCAGTTAATCTAAATCGTCACAAACGCACTCATACTGGGGAAAAACCGTATAAGTGTCAATATTGCGATCGTGCTTATGCTCAAAGCAATGATTTAACCAAACATTTGCGAACGCATTTAGGCGAAAAAGTGTATATTTGCAATAAATGCCCGGAAGCCTTTAAATATCATGCGGAATTGAAAAAACATCAATTGCAACATTACCATGAAGAACAAGAATTACAAATATCAGCAAATTCCACCGATATAAAATGTGATGTTGAAAAATGTTGA
Protein Sequence
MALDFTLMCRTCLSENNVYHKLQDAPLENYKILEMLTALVPQLNIDKEDLTFPVLVCDSCVDQLLKAFKFQQQCLQSNKIFMTLVANNPSTTTNAATGVVVLNCNKMKMEVEDDIHLPENNNFKVEMDIGEEAKQENFPSEMNPQEIEMVLNANSVDWFHNNDSVEDDAFSAKDILDISSKDKDTSIETIASKLRALERANHKDAQTAKLLCPQCPKTFKTQKLLNKHIARHANKLPKMKTTTRKKNSLDKKLKTDTIGDVEKIRIKTDTDDAAANILEKGQDGKDAKNQENENPTNEVKSEIIHDDDNKDFIDTGIGEIEKPNSNNRRNGCYQCQECGKVFDRPYRLKRHSGVHSLERPYQCEQCKYRFLTQALLKAHKQMHDNEKRGIQITHPTPINGFKCPDCPRRFEKQASMAAHRQTHTRNAGLASYPCPACERKFMKIRSLAEHMSNKHPEIEKHQCNQCEKSFVLHAHLVEHLNRHMGNKNLVCLVCEKEFSYGNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHGNEKRYQCPECPSRFACQSDRIKHMSIHTNHKPHVCDLCGSRFTRSYSLSKHKQLHTGERPHKCDQCNMAFAIVYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYIAQTYYSLQDTIVRIKDDENLSLQVMLEQIIIDCKTLPEDLKMPEEICELCMEQLKICFKFQQLYRHTNEQLLRIWEQMRTSSITVSDAIETVKSQETGTIDLIEEEFRQIQQSKNIIFDINSHNSSMECNITHSGHNGCLNCNVVTVTKTHQFFRHNKQQSLENNFVCKICLYRYTTNTLLEEHIRKTHQPRILLKIIDLKRFWNKELLEEQREGISSIISENVESLEKSSGSNEYESDNNDTNDYLTSYKPLLSCTECRATFKTAKRLKCHKKTHVKCYRFVCHVCDHRFKFPHLLKQHLIKVHAQFPNNKNSNGSVDKLTVEKQVQFHCNYCKCAYNSVGSLAQHMSKKHPTIKPFRCDKCDKAFVVEEHFKIHINPFSFKFAMKQHMRMHTEPAPYLCTLCGKTFYRPSNLRQHMQRHGEDKPYACPHCPRRFKCPSDRYIHLMSHNAGKVHVCSICGSRFSRLDTLNNHQMLHSGKKPYKCDQCSMAFASPVNLNRHKRTHTGEKPYKCQYCDRAYAQSNDLTKHLRTHLGEKVYICNKCPEAFKYHAELKKHQLQHYHEEQELQISANSTDIKCDVEKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00749117;
90% Identity
iTF_00749117;
80% Identity
-