Basic Information

Transcription Factor Domain

TF Family: RHD
Domain: RHD domain
PFAM: PF00554
TF Group: Beta-Scaffold Factors
Description: Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2e-11 3.9e-08 33.6 0.0 6 53 38 85 34 87 0.89

2 3 0.00052 1 9.4 0.0 145 168 84 107 82 108 0.94

3 3 3.8 7.4e+03 -3.1 0.0 28 56 142 170 139 173 0.73

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2e-11	3.9e-08	33.6	6	53	38	85	34	87	0.89
2	3	0.00052	1	9.4	145	168	84	107	82	108	0.94
3	3	3.8	7.4e+03	-3.1	28	56	142	170	139	173	0.73

Coding Sequence: ATGATTGGTATTGATTACCGTCAGATTGTTTCGACACTGCTGTTTTGCTGCGGCTATAAAGGCGTCTCAGAATCTAATTATACGAACCGGAAACCAAAATGCATTCTAAATGAACATCATGAGTGCTCTATGGCGTTTCGATATGAAAGTGAGGGAAGATCTGGTGACCCAATACTTGGTGATAATTCAACGCTTGAAAATAAAACTTATCTGTCAATTGAAATAGTTGGCTATACAGGCCAAGCTATAGTATTTATAGATGATAAGAAAGGAGATTTTGTTAATCCCCTGTATCCGATTGTTTCGGAACCAATTTACGAAATGAAAGCGATGTCGGAATTGAAGATATGTCGTGTATGCACTTGTCCCGCCGGTAAGAACGATCAAATTGTTTGGCAAGATTACGGTTCTTTTAAAATTACCGACGTTCGTTCGATAGCTATTGCTTTCACCTTACCGCCTTGTCGCATAAAGAATATCAAAAGACCAGTTGACGTGTTTATACAATTAAAGCGACCCTCAGATGGACTCCTCAGTGAACCAGTTCCTTTTCGATATTCACCCTCGATTTCGGATGACGAACAATTAAAACGGAAAATTTATTCTACTTCTAGGAAATTTCTTCGAATGCAAGCGCTACAACGGCAAAGGAATCAATGGAATATATCGGGTATTAAACAAGTGTCGGACGACGTTTCAATGCTGCTGGATGAGTACTCCACAGTGCCTAGCACTAGCACTCCATATGTGCATAGTCATCAAATTGAATTACGAACCAACCAATAA
Protein Sequence: MIGIDYRQIVSTLLFCCGYKGVSESNYTNRKPKCILNEHHECSMAFRYESEGRSGDPILGDNSTLENKTYLSIEIVGYTGQAIVFIDDKKGDFVNPLYPIVSEPIYEMKAMSELKICRVCTCPAGKNDQIVWQDYGSFKITDVRSIAIAFTLPPCRIKNIKRPVDVFIQLKRPSDGLLSEPVPFRYSPSISDDEQLKRKIYSTSRKFLRMQALQRQRNQWNISGIKQVSDDVSMLLDEYSTVPSTSTPYVHSHQIELRTNQ

Sequence clustering based on sequence similarity using MMseqs2