Gspa034272.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Globia sparganii
Gene Symbol
-
Assembly
GCA_949316385.1
Location
OX438682.1:6229089-6230114[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.25 26 6.6 0.3 3 23 25 46 23 46 0.90
2 10 0.0065 0.66 11.6 0.2 2 23 72 94 71 94 0.93
3 10 0.0003 0.03 15.8 0.3 2 23 117 138 116 138 0.97
4 10 0.00051 0.051 15.1 0.0 1 23 142 164 142 164 0.98
5 10 7.2e-06 0.00073 20.9 1.9 1 23 169 192 169 192 0.98
6 10 0.32 32 6.3 0.8 2 23 200 222 199 222 0.93
7 10 0.00017 0.017 16.6 2.0 2 23 230 252 229 252 0.96
8 10 2.4e-05 0.0024 19.3 1.8 1 23 258 280 258 280 0.98
9 10 1.3e-05 0.0013 20.1 0.6 1 23 286 308 286 308 0.99
10 10 3.8e-05 0.0038 18.6 4.4 1 23 314 337 314 337 0.97

Sequence Information

Coding Sequence
ATGAATCTAAAGAATATATTGCTCAACTCTAACGCAAACCCAATaagatgtaaagatggtcatggATATGGCTGTTCGTTCTGTCCAAAACAGTTTTTGGAGCCGACTGCTCTCAAGAAGCACTTTCTAGAAGAACATAACAATGACAAACTGATAAAGTACATGATCGGTAAGCTATTTGATCATGTCATCAAACTAGATATAACGTACTTGAATTGTGCTCTTTGTGACAAAGACGTCAAACATTTGGACGACCTTGTAGCACATCTGAAGGACGAACACAACAAATCGATGTATCTAGACGTTAAAAGCCAAATCGTCCCGTTCAGATTCGACTCACCCGAACTAAAATGTGTCATATGCTCCGCAGAATTCAGTTCATTCAAACTTTTACAAGAACACATGAATTCACATTTCGGTAATTATATTTGTGAAATATGTGGAGCAGGATTTGTGACTGACAGACTCCTAGTTAGCCACGTCAAACGGCATGACAACGGAGAGTATAAATGTGATCAATGCGATAAAACTTTTACAAACCAGATCAAAATACGCGAGCACATAAAACGAACACATCTAGGTCAGGGCAAGAGAAACAAATGCAATTACTGCGCGGAAAGATTCTTTGATTACTGGAAAAAGATGGATCATATGGTAAAAGAACATGGATTGCCCCCTGTCGTTCTTAAATGTACTGCTTGTGAGCGAACTTTTAGTAACCAACGGTCCTTATCACAGCACACGAAGAAAGATCACCTTTTGGAGAGAAGGCATAAGTGTGGCGAATGTGACATGAGGTTTTTTGGAAAGAGTGGCTTGCAGAAACACATGGCTAAGCACACGGGGCTGAGGCAGTTCAGATGTGAAGTTTGCTTAAAGGCTTATGGAAGGAAGAATACGCTAAGAGAGCATATGAGGATTCATGCGAATGACAGGAGATTCGCTTGCACTCACTGTGGCCAAGCGTTCGTCCAAAAATGTAGCTGGCGGAGTCACATGCGTTCGAAACATGGAGAAGAAGTGTAA
Protein Sequence
MNLKNILLNSNANPIRCKDGHGYGCSFCPKQFLEPTALKKHFLEEHNNDKLIKYMIGKLFDHVIKLDITYLNCALCDKDVKHLDDLVAHLKDEHNKSMYLDVKSQIVPFRFDSPELKCVICSAEFSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVKRHDNGEYKCDQCDKTFTNQIKIREHIKRTHLGQGKRNKCNYCAERFFDYWKKMDHMVKEHGLPPVVLKCTACERTFSNQRSLSQHTKKDHLLERRHKCGECDMRFFGKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHANDRRFACTHCGQAFVQKCSWRSHMRSKHGEEV