Asor026540.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000095.1:817365-818751[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.31 26 6.3 0.3 3 23 81 102 79 102 0.90 2 10 0.008 0.67 11.3 0.2 2 23 128 150 127 150 0.93 3 10 0.00036 0.03 15.6 0.3 2 23 173 194 172 194 0.97 4 10 0.00062 0.051 14.8 0.0 1 23 198 220 198 220 0.98 5 10 8.8e-06 0.00073 20.6 1.9 1 23 225 248 225 248 0.98 6 10 0.12 9.7 7.7 0.4 2 23 256 278 255 278 0.94 7 10 8.3e-05 0.0069 17.6 2.3 2 23 286 308 285 308 0.96 8 10 2.9e-05 0.0024 19.0 1.8 1 23 314 336 314 336 0.98 9 10 8.4e-06 0.0007 20.7 1.0 1 23 342 364 342 364 0.99 10 10 4.6e-05 0.0038 18.4 4.4 1 23 370 393 370 393 0.97
Sequence Information
- Coding Sequence
- ATGGTTGGACTAAAGTGGACTGTTGTCGGTCACGGACGAGGAACTAGGATAATCAAAATAGAAAAACCGACAAAAGCAACCGTTGAATTGAAGTTCATCTCAAAACTAACAACGAGAGACCCAAATGCCGTCATAAAAGGCTCCATATCAGAAACTGTGAAGAACAAAATGaatctaaaaaatatattgctaaaCTCTAACGCAAACCCAATaagatgtaaagatggtcatggATATGGCTGTTCGTTCTGTCCAAAACAGTTTCTTGAGCCGACTGCTCTCAAGAAGCACTTTCTAGAAGAACATAACAATGACAAATTGATAAAGTACATGACTGCTAAGCTATTTGATCATGTCATAAAGCTAGATATAACGTACTTGAATTGTGCTCTTTGTGACAAAGACGTCAAACATTTGGACGACCTCGTAGCACATCTGAAGGACGAACACAACAAGTCGATGTATCTAGATGCTAAAAGCCAAATCGTCCCGTTCAGATTCGACTCGCCCGAACTAAAATGTGTCATATGCTCTGCAGAATTCAGTTCATTCAAACTTTTACAAGAACACATGAATTCACATTTCGGTAATTATATTTGTGAAATATGTGGAGCAGGGTTTGTGACTGACAGACTCCTAGTTAGCCACGTCAAACGGCATGATAGCGGAGAGTATAAATGTGATCAATGCGATAAAACTTTTACAAACCAAATTAAAATACGCGAACACATTAAACGAACACATCTAGGACAGAGCAAGAGGAACAAATGCAATTATTGCGCGGAAAGATTCGTCGATTACTGGAAAAAGATGGATCATATGGTGAAAGAGCATGGAATGCCCCCTGTCGTTCTAAAATGTACCGCTTGTGAGCGAACTTTTAGCAACCAACGGTCTTTATCACGGCACACGAAGAAAGATCACCTTTTGGAGAGAAGGCACAAGTGTGGCGAATGTGACATGAGATTCTTTGGAAAAAGTGGTTTGCAAAAACACATGGCCAAGCACACGGGGCTGAGGCAGTTCAGATGCGAAGTTTGCTTAAAGTCTTATGGAAGGAAGAATACGCTAAGAGAGCATATGAGGATCCATGCGAATGACAGAAGATTCGCTTGCACTCACTGTGGCCAAGCGTTCGTCCAAAAGTGTAGCTGGCGGAGTCATATGCGCTCGAAACATGGAGAAGAAGTGTAG
- Protein Sequence
- MVGLKWTVVGHGRGTRIIKIEKPTKATVELKFISKLTTRDPNAVIKGSISETVKNKMNLKNILLNSNANPIRCKDGHGYGCSFCPKQFLEPTALKKHFLEEHNNDKLIKYMTAKLFDHVIKLDITYLNCALCDKDVKHLDDLVAHLKDEHNKSMYLDAKSQIVPFRFDSPELKCVICSAEFSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVKRHDSGEYKCDQCDKTFTNQIKIREHIKRTHLGQSKRNKCNYCAERFVDYWKKMDHMVKEHGMPPVVLKCTACERTFSNQRSLSRHTKKDHLLERRHKCGECDMRFFGKSGLQKHMAKHTGLRQFRCEVCLKSYGRKNTLREHMRIHANDRRFACTHCGQAFVQKCSWRSHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026628;
- 90% Identity
- iTF_00746076;
- 80% Identity
- -