Gspa022542.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Globia sparganii
Gene Symbol
ham
Assembly
GCA_949316385.1
Location
OX438669.1:9059465-9099498[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.036 3.7 9.2 0.0 2 23 214 236 213 236 0.96
2 9 0.001 0.1 14.2 0.8 1 23 243 266 243 266 0.93
3 9 2.1e-08 2.2e-06 28.9 0.1 1 23 272 295 272 295 0.96
4 9 1.8e-06 0.00019 22.8 1.7 1 23 301 323 301 323 0.95
5 9 6.5e-05 0.0066 17.9 6.1 1 23 329 351 329 351 0.99
6 9 0.00013 0.013 16.9 0.4 2 21 359 378 358 379 0.94
7 9 1.6e-08 1.6e-06 29.3 0.7 1 23 776 798 776 798 0.98
8 9 5.6e-07 5.7e-05 24.4 1.7 1 23 804 827 804 827 0.97
9 9 2.1e-05 0.0021 19.4 3.2 1 23 833 855 833 855 0.98

Sequence Information

Coding Sequence
ATGCCTCCAGGAACAGATGTTAAGGAGTACTACGGTACTCTAGACTTTGGGCTATCAGACACATATCTAGCCAATAAATTCCCCGACTATGGAAGAGGATACTTATCCAGACCTCTAGATCACTTAAAGTCGGTCAAAAATGAGGATGGGACGAAATGTGATGATCTAGATGTAATTAGGAGGATAGAAGATATAGATTTAATtctacaacaacattcattgatgtTTAAAAGTGGAGGGATATTTGCTACAGTGAATATTGCTAATGGAACTCAATATGGACCCTTTGTGGGATTGTTGGAGAATCAGCCGAAGGACAGGCGCTGTGCTTGGGAGGTCCGTGACAAGAATGGCGTCAGTGGCTGGTTGGACGCCACTTCAGAGAAGAGCAACTGGCTCAAGATGGTGCGCTCCACCAACTGCCCGCATGATGTCAACGTACAACCTTTTTTGTTGGCTGGACAGGTGTGGTACAAGGTTGTCCGGGAGGTTCCCTCCGGCCAGGAGTTGCTGCTGGGTCCTCGGACACCCATCTACTTAGATGACATACTCTCTTTGGACTCAAAGCGTCAGTCATCCATTGATAAGTTCAGTTCTCTGGCGTCAGCTGACGACGAAGAACGAGAGGACGCTGACATCCGCTGCAGCTTCTGCGATCTACCCTTCCCTAACATCGACGTTCTCGATCGGCACTTGATAACGGAGCACGCCCAGCCGGCCGCTGCATTTCATTGTGAACTCTGTAACAGAGCTTACAGCACTCGGGTACTGCTCCTGCGACACCGTGCGCTTGCGCATACTGACATCAGAAAGTACCCCTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCTCAGCACGCGGGAGCCCGCAGCCACGCCTGTCCTGAATGCGGGAAGACTTTCGCGACTTCCTCCGGCCTGAAGCAACACACACACATCCACTCCAGCGTCAAGCCATTCCAGTGCAAGGTTTGCTTTAAGGCTTACACCCAATTTTCCAACCTCTGCCGTCACAAACGGATGCACGTTGCTTGCAGAGCTCTCGTTGAATGCGGAAAATGCGGTCAGTCCTTCACGTCTTACGCCTCTCTTACTAAACACAAGAGATTCTGTGACACCGCTGCCGCCGCTTCAGTCAACCTCCGAGGGCAAATGCCCCAAGGTCTACCGCAAATACCGTCACTTCAAAACGTCGGGATGAATAACCCAAATAACACCAACCCATTCCCCATGTACAGGGGACCAACCCTGCCACTGCCATACAATACATTTGCTCACTACCCGGCGCTGTTCTCAGCTGCCGCTGCTGCTGCCTGCCCACCGGAGTTCCTTAGCCCATTGCTCTTTAACGTACAAGGAGCAAGACTCGCTATGGAACACGACATGGCCATGTCAAATGCTAATTTGGTATCCAAACAGCAGGAGGGCCGCCTATCAGTAAAAAGCATGGACAGCTCAAACTCTTTAGATGATAACAAGAAGCCTAAAGATTTGGATTTCGATAACAAACGAGACAGCTATAGTTCAGATAGGGCTACGCCTAACAAATCCCATAGTTTTTATTCGAAGCAATCGCCTCCTTCTGGAGAGGAAGCTTCTTCTCAACGTCGACCGTCACCAGTCATGCCACTATCCACACCGATTGCTCCATTCAGTTTCTCAAGAGATGAAATGAAACGCAAATCTCCGTTCAACTTCTCTCTCAAACTCAATAATAATGACATTCAGGGTAACAAGTCTTTATCGCCACTACCTAAAGACTTGTCCAAGAATGTCATCGAAGACGATAAAACTTCTGAATATTCGGATGTTGAAGAAGATACAAAAAAAGACGAAGGTGACCAGCCTCTAGATCTATCAGTTTCAAGGAAACAAAACGATAAGGATTCTGAAGCAGAGAATGACGATCGTTCTTTTCGCCACTCAGTCAAGTCTTATTCACCTCCTGAAAGCCCAGCTGAGAGGAACAAGACTCCTGAAAATGACACAACAGACGTCGATGTGGAAGGCGTAGAACCTAAGAGGGAGGAATCGCCACCGCAGCTAGTATCACCACCTTTGGCGTTCCCCATGCCCGTACACCCACAGCATAGCAACTTAATTGATGCCATGTACCGGCCTCGATTCCCATCGTTCCACACTTCCGAATCACTTCTGAACTCTTCGCACTCTCCTTATGTTCCGAGTCCGTTCAATTTTTTATCCCCACTTCTCGGTACTGATGGACCCGACAGGCAACAAAGCGcgtatgccaagtttcaagagCTTAGTTCAGGGTCAGGAAAACTACGTGATCGGTACGCTTGCAAGTTTTGTGGAAAAGTGTTCCCGCGGAGTGCAAACCTGACTCGTCACCTACGTACACACACTGGCGAGCAACCCTACAAGTGCAAGTATTGCGAGCGCTCGTTCTCGATCTCATCGAATCTTCAACGGCACGTGAGGAATATTCACAACAAGGAGCGGCCATTTCGGTGTCCATTGTGCGAAAGATGTTTCGGGCAGCAGACGAATCTCGATCGTCACTTGAAGAAGCACGAGGCAGAAGGTGGTGATTCTCCTAGCTCAGCGGATACTGAAAGGGAGGATGCGTATTTTGATGATATTCGGTCGTTCATGGGTAAAGTGACGTGTTCACCTGGCGCGCGGTCACCGGCAGCGACGCCTCCGCACGGCGCGCACGCGGCCCACGGGGCTCACGGGGCCCACGCCGCGCACGGCCCGCGCCCCTCTCTCGCTATCTCCACATAG
Protein Sequence
MPPGTDVKEYYGTLDFGLSDTYLANKFPDYGRGYLSRPLDHLKSVKNEDGTKCDDLDVIRRIEDIDLILQQHSLMFKSGGIFATVNIANGTQYGPFVGLLENQPKDRRCAWEVRDKNGVSGWLDATSEKSNWLKMVRSTNCPHDVNVQPFLLAGQVWYKVVREVPSGQELLLGPRTPIYLDDILSLDSKRQSSIDKFSSLASADDEEREDADIRCSFCDLPFPNIDVLDRHLITEHAQPAAAFHCELCNRAYSTRVLLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHAGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLPQIPSLQNVGMNNPNNTNPFPMYRGPTLPLPYNTFAHYPALFSAAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVSKQQEGRLSVKSMDSSNSLDDNKKPKDLDFDNKRDSYSSDRATPNKSHSFYSKQSPPSGEEASSQRRPSPVMPLSTPIAPFSFSRDEMKRKSPFNFSLKLNNNDIQGNKSLSPLPKDLSKNVIEDDKTSEYSDVEEDTKKDEGDQPLDLSVSRKQNDKDSEAENDDRSFRHSVKSYSPPESPAERNKTPENDTTDVDVEGVEPKREESPPQLVSPPLAFPMPVHPQHSNLIDAMYRPRFPSFHTSESLLNSSHSPYVPSPFNFLSPLLGTDGPDRQQSAYAKFQELSSGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGARSPAATPPHGAHAAHGAHGAHAAHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441779;
90% Identity
iTF_00177403;
80% Identity
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