Gspa026879.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438673.1:5350248-5353279[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.24 8.4e+02 0.7 0.0 5 18 3 16 2 29 0.81 2 2 1.2e-15 4.1e-12 46.6 0.0 7 70 39 100 34 105 0.88
Sequence Information
- Coding Sequence
- ATGCCAGAACAGCAACACCTCCCATTACAATATTCTTTTAGACAAGCCAGTGCAACCTCATCGCCAGCACAACGCGGCGGCCGTCGAGCCACCACTGAGATGTCCTCTCCCTTACTGCGGGTACCTCTGGAACGAGGGTGGAAAAGAGAGCTGGTGTACCGCGCGGCTCTCGACGCTCATTCGCGGCGTAACGCCGATATTTATTACTATACGCCCTATGGAAAGAAGCTACGGTCTACGAGAGAGGTCTCAGAACATCTGTCTGGCACGGGGCTGACAGCAGAAAACTTCTCTTTCTTCAAAGAACCGCTTGGAGTTGACGACCCTGACAAGGAAATCATAAGAGACGCAAAACTAATCCGTCGCGTGGACTCCCCGGTCGCGGCGGCAGTTCCGCCTGTCCAGGTTGAGGGTAAGAGAACTCCGAAACCGAAGGCTCCTAAAGGAGCCAGTCCTGAACCTGTACCTCCTGCTACCGCTGCAGCTGCTAACAAGTCACCTCCAGCTAAGATTAAGGTAAATGTAAAGGCAATGGTGTTCGTTGTTGggcgatggatggaaataaataataaatgtgtttccccaatataa
- Protein Sequence
- MPEQQHLPLQYSFRQASATSSPAQRGGRRATTEMSSPLLRVPLERGWKRELVYRAALDAHSRRNADIYYYTPYGKKLRSTREVSEHLSGTGLTAENFSFFKEPLGVDDPDKEIIRDAKLIRRVDSPVAAAVPPVQVEGKRTPKPKAPKGASPEPVPPATAAAANKSPPAKIKVNVKAMVFVVGRWMEINNKCVSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -