Gspa032379.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438679.1:12039056-12039954[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-10 2.4e-07 31.4 0.0 1 42 18 59 18 62 0.89 2 2 4.3 1.7e+03 -0.1 0.1 14 23 142 150 136 152 0.71
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATATATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAAGCATTAATAGCTGCAATAGATGAAATTTCGAGAGGCATTCTCGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTAAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGgaaaaCACCCACTGCTTGATTTTGTAAACGAAAAACGTTTGGTGAGCCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCGACCCGGGACATGATTCGAAGATTGGCATTCGAGTTTGCTGAAAAACTGGGTAAagaaaccaattttgataaggAGACTCGAAAGGCTGGGCCGCATTGGTTAAGATCATTTTTAGAACGTAATACAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTTCAATATAGATGAGACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATTGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGGTGAAAAAGGTGAAACTCTATCGGTAATAGCGTGCTGTAATGCTGTAGGGAACTTTCTTCCCCCAGTAGTCATCATCAAAGGAGTAAACAAGAAACCAGAATTTCAGGATGGGCTCCCACCCGGATCAGAAGTCTATATGAATAGAAAATCCGCGTACGTGAATGCTGAATTATTTCACAAGTAG
- Protein Sequence
- MPRKYIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFDKETRKAGPHWLRSFLERNTELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIFNIDETGVQLNNSTGKVIATRGARVVHSITSGEKGETLSVIACCNAVGNFLPPVVIIKGVNKKPEFQDGLPPGSEVYMNRKSAYVNAELFHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00622753; iTF_00622754; iTF_00622755; iTF_00622756; iTF_00622757; iTF_00622758; iTF_00622759; iTF_00622749; iTF_00622750; iTF_00622751; iTF_00622752; iTF_01264362; iTF_00037744; iTF_01440945;
- 90% Identity
- iTF_01440945;
- 80% Identity
- -