Gale035599.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990063.1:14581199-14586386[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2 1.2e+04 -2.3 0.6 27 41 2 16 1 18 0.84 2 9 0.0074 75 4.7 0.6 20 46 201 227 190 233 0.72 3 9 0.022 2.3e+02 3.2 0.1 23 44 232 253 228 257 0.89 4 9 0.025 2.5e+02 3.0 0.0 21 52 258 289 253 290 0.86 5 9 0.0091 92 4.4 0.0 22 46 287 311 282 314 0.90 6 9 0.0057 58 5.1 0.1 22 51 315 344 310 345 0.85 7 9 0.00066 6.7 8.1 0.0 20 46 341 367 338 370 0.92 8 9 0.0014 14 7.0 0.1 22 49 371 398 368 401 0.86 9 9 0.0017 17 6.8 0.1 21 46 398 423 394 425 0.90
Sequence Information
- Coding Sequence
- ATGTGTTATATTTGCCACACGAGACTGCAGCAATGTCACCAGCTGCAGCAGCTGGCCGTACAGACACGAGGTCTCATTGATGATATATTCCAGAATAAGATTGATATTAAGTTTGGATCGTTTGGATCTTTGTTACAATTGTCAACCTCCAAGACAATGATAACTAATAGAACGTACAACTCATCATATATCAAAGAGAAGTCTGAAATGcaaacaacattttataatgacaatgGTAATACAAATCAATATGAAGTAGAAGTGGAGGGTTTTCCACTGTCCATTGAACCTGAAGATCCTCTCGTTGACACTAGACAGACGTCAACGAATATGGCCTTTGACGATATGCAAAAGTCTAAGGTCCAGAAGGTGAAAATTGAGAATAGAGATGCAGCAAATGACGGTGAATATATTGTCCCGAGTTGGATATCATCGCCGGTGACGGAATTGTATCTCGCGAACGCGGGGGAACAGAGCAGGGGGCATACAGAAATAAAACTAGAAATGGAAGATAGTATCGAACGAGACAACGAACAAGACAACACAAATGATTACGGGGGGCGAGGCCATGCCAGTCAAGCGCGGTCCAGTAGAAAGCGCAAGTACAAGAAACCACAAACCTGCGATATATGTTCCAGAAGTTTCAGATTCAAAAGCCAATTGCTTCACCACAAAAAGATTCATACGGGCATAAAACCACATAGCTGTGAAGTGTGCTCCAAGAAATTCAGACAAGTCAGCGATCTAAATAAACACAACAGAATCCACACGGGCGAGAGACCGTTTAGCTGTGACCTTTGTTTGAAGAACTTCAAATTCAAAAGTGATTTATTACGGCACATCAAGATACATAGCGGCGACAAACCTTTTAAGTGTGATATTTGCGAAAAACTGTTCAAGAATAAGGAGTGTCTGAATAGGCATATGAAAATGCATACGGGCAACCAACCGTTCAGTTGCCATATTTGTGTGAAGAAGTTTTTATACGAAAGTGACTTGCAACGCCACATCAAAACTCACCAAACTGAGAAACCGTTCAGCTGTGATCTTTGTTCGAAGGAGTTTAAAGAGGAGTATAATTTAGATAGACACATGCGGATACATATAGGCGACCAACCGTTCAGCTGTCATATTTGTGAAAAGAAGTTTTTATACGAAAGCAACTTACAACGTCACATCAAAACTCACAAAAAAGAAAAGCCATTCAGTTGTGATGTATGTTCAAATAGGTTTACAGAGAAGCATAATTTAGAGAGACACATGCGGATTCATATGGGCGATTAA
- Protein Sequence
- MCYICHTRLQQCHQLQQLAVQTRGLIDDIFQNKIDIKFGSFGSLLQLSTSKTMITNRTYNSSYIKEKSEMQTTFYNDNGNTNQYEVEVEGFPLSIEPEDPLVDTRQTSTNMAFDDMQKSKVQKVKIENRDAANDGEYIVPSWISSPVTELYLANAGEQSRGHTEIKLEMEDSIERDNEQDNTNDYGGRGHASQARSSRKRKYKKPQTCDICSRSFRFKSQLLHHKKIHTGIKPHSCEVCSKKFRQVSDLNKHNRIHTGERPFSCDLCLKNFKFKSDLLRHIKIHSGDKPFKCDICEKLFKNKECLNRHMKMHTGNQPFSCHICVKKFLYESDLQRHIKTHQTEKPFSCDLCSKEFKEEYNLDRHMRIHIGDQPFSCHICEKKFLYESNLQRHIKTHKKEKPFSCDVCSNRFTEKHNLERHMRIHMGD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745000; iTF_01178894;
- 90% Identity
- iTF_00745000;
- 80% Identity
- iTF_00745000;