Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990061.1:2085535-2094741[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.6e-05 0.0028 19.1 3.9 1 23 156 179 156 179 0.95

2 20 0.005 0.54 11.9 1.6 2 23 185 207 184 207 0.94

3 20 0.00052 0.057 15.0 0.1 2 23 216 238 216 238 0.96

4 20 0.0063 0.69 11.6 1.6 2 23 247 269 246 269 0.94

5 20 2.5e-05 0.0027 19.2 0.4 2 23 277 299 276 299 0.96

6 20 1.6e-06 0.00017 22.9 1.0 2 23 307 329 306 329 0.96

7 20 3e-06 0.00033 22.1 4.4 1 23 335 358 335 358 0.98

8 20 0.0027 0.29 12.8 0.2 2 23 405 427 404 427 0.95

9 20 0.53 58 5.6 1.4 1 23 457 480 457 480 0.93

10 20 0.33 36 6.2 0.3 2 21 488 507 487 508 0.91

11 20 0.01 1.1 10.9 1.1 3 23 518 539 517 539 0.96

12 20 0.039 4.3 9.1 4.8 1 23 562 585 562 585 0.96

13 20 2.4e-06 0.00027 22.4 0.4 2 23 592 614 591 614 0.97

14 20 2.7e-05 0.003 19.0 3.1 2 23 621 643 620 643 0.92

15 20 0.044 4.8 8.9 1.6 1 23 649 672 649 672 0.91

16 20 3.8 4.2e+02 2.9 4.7 2 23 680 702 680 702 0.95

17 20 0.0045 0.49 12.1 0.0 1 23 709 732 709 732 0.90

18 20 0.61 67 5.4 0.1 1 14 739 752 739 762 0.75

19 20 0.0012 0.13 13.9 2.3 5 23 777 796 774 796 0.91

20 20 9.7 1.1e+03 1.6 0.1 2 15 816 829 815 832 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.6e-05	0.0028	19.1	3.9	1	23	156	179	156	179	0.95
2	20	0.005	0.54	11.9	1.6	2	23	185	207	184	207	0.94
3	20	0.00052	0.057	15.0	0.1	2	23	216	238	216	238	0.96
4	20	0.0063	0.69	11.6	1.6	2	23	247	269	246	269	0.94
5	20	2.5e-05	0.0027	19.2	0.4	2	23	277	299	276	299	0.96
6	20	1.6e-06	0.00017	22.9	1.0	2	23	307	329	306	329	0.96
7	20	3e-06	0.00033	22.1	4.4	1	23	335	358	335	358	0.98
8	20	0.0027	0.29	12.8	0.2	2	23	405	427	404	427	0.95
9	20	0.53	58	5.6	1.4	1	23	457	480	457	480	0.93
10	20	0.33	36	6.2	0.3	2	21	488	507	487	508	0.91
11	20	0.01	1.1	10.9	1.1	3	23	518	539	517	539	0.96
12	20	0.039	4.3	9.1	4.8	1	23	562	585	562	585	0.96
13	20	2.4e-06	0.00027	22.4	0.4	2	23	592	614	591	614	0.97
14	20	2.7e-05	0.003	19.0	3.1	2	23	621	643	620	643	0.92
15	20	0.044	4.8	8.9	1.6	1	23	649	672	649	672	0.91
16	20	3.8	4.2e+02	2.9	4.7	2	23	680	702	680	702	0.95
17	20	0.0045	0.49	12.1	0.0	1	23	709	732	709	732	0.90
18	20	0.61	67	5.4	0.1	1	14	739	752	739	762	0.75
19	20	0.0012	0.13	13.9	2.3	5	23	777	796	774	796	0.91
20	20	9.7	1.1e+03	1.6	0.1	2	15	816	829	815	832	0.81

Sequence Information

Coding Sequence: ATGGGAAGACTCAACTTCGCCACATTCGTCGTTCGCCGAGGTCGTCTACACTGTCGAACACTGCAGTATTACAGTCGACGTCTGTCCACCAAACATCCATACCGAAAATCTCCTATACCTGACCCTGCGCTACAGGAGATGGTTTGGTGGATAAAGGAAGCAGATGGGACATTACCGATACACTCGAACCCGATAACTCACTTCCTAACGACCGACGCGTCTAACATCGGTTGGGGTGCGCAGCTTGGAGAAAAGAAGGTGGCAGGAAGGTGGAAGCAGGATCAAAAAGATTGGCACGTAAACCTGAAAGAGCTGTATGCCGTTCACGCAGCGGTAGCCCAAGAATGCCATCAACTACAGAATGCACAAGTATTATTACAGACGGACAATCGCACTGTAGTTGCCTACATTAACAAGGAAGGTGATATGTCAAGCAATGAAAATTCCTGTGACAAACCAAAGGAGTACATTTGCGATTACTGCAGCCGCACCTTCACCCGGTACTACAACCTGCAGACGCACATCGAGAACTGCCACCTGAACTCGTCATGCTGCTGCGAGATCTGCTACCAGAGTTTCGGCAGCCCGGCCGGCCTACAGCAGCACCTCAGCCGCGGCCACAACCGCTTTGGCCAGGGGCTGCCGGAGTGCGACATATGCGGCAGAATATACGCCAGGAAGCAGAACATCGCCACCCATATGGTTACCAGCCACCTGCTGGGCTACCGCCCGGAGATACGCTGCGACCTATGCTGCAAGGTGTTCACCACGGACCGCAACCTCCGCCGACATGTGGCCATGCTCCACAACCCCGACTTCGAGTATCTCACCTGCGATATGTGCAAAAAGATCTTCAAGGGCAAAGATTCGTTGATTACTCACATTCAAACGGTGCACGCCCCGTTGAAGGACCTCATAAAATGTCAGGAGTGCGACAAAATTTACACTAACAAGAGAAATCTGAAGCGCCACATTGAAATGAGTCACGAGAAAAGAGTGGAGTTCAAATGCTCAAAATGCACGAAATCTTACACATCAAAGCAGAGCTTGAAACGACACATGCAAAGTATGCACTCGGAGAGTCACGATAATTACTCTCCTTTACTTCATCCCATTTCAATTGAAGGCAAAGATGACACAAACATTTCGATGGAGATGGAGGAGTACGAAAGAATCAGTGAATCTCGACGCAAAAATCTAAAGAACCATCTCGTTTGTGAAATTTGTTCTACGCTATTTTCCGAAGAAGCGCAGCTACGGAAacacataaaagaaaaacattcattcCAAGACTTCTATAAATATTGTAAGAAAGTTCTACTGCTGAGATCCGGAGATCTGATAACAGATAGCAATAAAAAGAAGTGGCACTACTGTTATATCTGCTCGGACTACTTCGCGAGTGCGATCGAGCTGAAGCATCATATCGGATCCAGTCACGACAGAAAGTATCATCCGTCTACGTGTAACGTTTGCTTTCGACGTTTCTATAGCTATGAGTCGATCGCGGAGCACAGAAAAGTGTGCATCCCCCCACCGGACGCCAACGCCTGCAGCCACTGTGACAAGCTGTTCACCGACGTGTCGAGTCTGGAGTTccacattaaaatattccatCCGCAATCGCAGATCGCTGACTCCAATGTCTCGTCGACTTTCGTGGACGAGCCCGCGGAAACCATCTTCAAATGCAGTCACTGCGAGAGGGTATACTACGCTGAACGCTCTCTTCGACACCACGTCAAATTAAAACATACCCTGGACAAGGAAGTGCAGTGCCCGGTGTGCGGCAGAGTCTGCAGCAACAAGTACTACCTGGCGTCGCACATGAAGATCGTGCACAGCGACGACAACTGGTCCAAGTGCAAGTACTGCGGGAAACAGTTCAAAACCAAGAGGAATATCCGCCGCCACATTGAATTCACTCATCTGGGCCGTCAGAGGTACAAGTGCATCGCCTGCGACACCCTGTTCAAAGAAAAGCGAAGCCTGAGAAAGCACGTGCGCATGAAACATCCGAATTCCAATCTGTTTCCGCAGTGTCACATTTGCATGAAACGATTCGAGTCGGCGAAGTCGTGCAAAATCCACTTAAAGCTTTTACACTCGTTCAACATGAACACGTTCCCGTGTGGGATGTGTACTATGTCGTTTACGTCGCAGGAGGCGCTGGACAGCCACGTGGCCGCCGAGCATCTCGCCGAGAACGAGATCTACAAGTGCGAAGACTGCAACCTCATCTTCGAGGGCCAGGCAATATACGACCGGCATCGGGCGGCGCGCCACGCGGGCCCCAACAAGCAAAACCGCCAGATGCCGCGCTGCATACTCTGCGATAAAGACTTCAGCTCGCGGAAGACTCTGAAGAGGCACATCAAGAATTTCCATAAAGATTTCAAGGATGACGATTTAGCGAGCCTCTGCTACAAGCGGCCTGCCAACGTCGAGTGCCCGGACTGCATCAAGAACTTCACTGACGACTACTACTACAACGTGTATCAGAAGGTCAAGGACATCCCCGACGCGGTGGTCTTCAAGTGTGAATTTTGCAAAGCCTCGTATGGCTGCTTCGAGTATTTAGTGCTGCGGCATAAACAGAACTTCGATATAAGCAGAAGTAAACATTACTTGAGTGAGCTGTGTACGGCGGAAATGAGCGAGGAATCTGAGCAGTCCGATGAGGATATGGGGCTGATGCCGACAGCAGACGAGAGTATTCTGATGGAGCCCGAGAGTACCACGGCTGATGTGAAAATTGAGTTGACACAGATATTTGACTGCGACGTCAAAGTAGAACCACATTCCCCATAG
Protein Sequence: MGRLNFATFVVRRGRLHCRTLQYYSRRLSTKHPYRKSPIPDPALQEMVWWIKEADGTLPIHSNPITHFLTTDASNIGWGAQLGEKKVAGRWKQDQKDWHVNLKELYAVHAAVAQECHQLQNAQVLLQTDNRTVVAYINKEGDMSSNENSCDKPKEYICDYCSRTFTRYYNLQTHIENCHLNSSCCCEICYQSFGSPAGLQQHLSRGHNRFGQGLPECDICGRIYARKQNIATHMVTSHLLGYRPEIRCDLCCKVFTTDRNLRRHVAMLHNPDFEYLTCDMCKKIFKGKDSLITHIQTVHAPLKDLIKCQECDKIYTNKRNLKRHIEMSHEKRVEFKCSKCTKSYTSKQSLKRHMQSMHSESHDNYSPLLHPISIEGKDDTNISMEMEEYERISESRRKNLKNHLVCEICSTLFSEEAQLRKHIKEKHSFQDFYKYCKKVLLLRSGDLITDSNKKKWHYCYICSDYFASAIELKHHIGSSHDRKYHPSTCNVCFRRFYSYESIAEHRKVCIPPPDANACSHCDKLFTDVSSLEFHIKIFHPQSQIADSNVSSTFVDEPAETIFKCSHCERVYYAERSLRHHVKLKHTLDKEVQCPVCGRVCSNKYYLASHMKIVHSDDNWSKCKYCGKQFKTKRNIRRHIEFTHLGRQRYKCIACDTLFKEKRSLRKHVRMKHPNSNLFPQCHICMKRFESAKSCKIHLKLLHSFNMNTFPCGMCTMSFTSQEALDSHVAAEHLAENEIYKCEDCNLIFEGQAIYDRHRAARHAGPNKQNRQMPRCILCDKDFSSRKTLKRHIKNFHKDFKDDDLASLCYKRPANVECPDCIKNFTDDYYYNVYQKVKDIPDAVVFKCEFCKASYGCFEYLVLRHKQNFDISRSKHYLSELCTAEMSEESEQSDEDMGLMPTADESILMEPESTTADVKIELTQIFDCDVKVEPHSP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289025; iTF_01217680; iTF_01178865;
90% Identity: iTF_01178865;
80% Identity: -