Carg020587.1
Basic Information
- Insect
- Celastrina argiolus
- Gene Symbol
- -
- Assembly
- GCA_905187575.1
- Location
- LR994597.1:895221-898836[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3e-05 0.0014 19.6 3.7 1 23 30 53 30 53 0.95 2 20 0.0031 0.32 12.2 1.6 2 23 59 81 58 81 0.94 3 20 0.00011 0.011 16.8 0.1 2 23 90 112 90 112 0.97 4 20 0.004 0.41 11.8 1.6 2 23 121 143 120 143 0.94 5 20 1.6e-05 0.0016 19.4 0.4 2 23 151 173 150 173 0.96 6 20 1e-06 0.0001 23.2 1.0 2 23 181 203 180 203 0.96 7 20 6.5e-06 0.00067 20.6 4.2 1 23 209 232 209 232 0.97 8 20 0.0001 0.01 16.9 0.1 2 23 281 303 280 303 0.94 9 20 0.33 34 5.8 1.3 1 23 333 356 331 356 0.88 10 20 0.15 15 6.9 0.5 2 21 364 383 363 384 0.92 11 20 0.0049 0.5 11.6 1.0 3 23 394 415 393 415 0.95 12 20 0.025 2.6 9.3 4.8 1 23 438 461 438 461 0.96 13 20 2.9e-05 0.003 18.5 0.9 2 23 468 490 467 490 0.97 14 20 3.1e-05 0.0032 18.5 2.6 3 23 498 519 496 519 0.92 15 20 0.1 10 7.4 1.2 1 23 525 548 525 548 0.90 16 20 2.4 2.5e+02 3.1 4.7 2 23 556 578 556 578 0.95 17 20 0.0041 0.43 11.8 0.0 1 23 585 608 585 608 0.90 18 20 2.5 2.6e+02 3.0 0.2 1 20 615 634 615 638 0.67 19 20 0.00073 0.076 14.1 2.3 5 23 654 673 651 673 0.91 20 20 5.6 5.8e+02 1.9 0.1 2 15 693 706 692 709 0.81
Sequence Information
- Coding Sequence
- ATGTTTTGTGAAAAGCTCTACCTTACCGGACTGTTTTGTAAGAAAGAAATGTCGAGCAGTGAAGAATATTGTGACAAACCCAAGGAGTACATTTGCGATTACTGCAGCCGGTCCTTCACCCGGTACTACAATCTGCAGACGCACATTGAGAACTGTCACTTAAATTCCTCATGTTGCTGCGAGATCTGCTACCAGAGTTTCGGCAGCCCGGCTGGCCTGCAGCAGCACCTCAGCCGCGGCCACAACCGCTTTGGGCAGGGGCTGCCGGAATGTGACATATGCGGCAGAATATACGCCAGGAAACAGAACATCGCCACCCACATGTTGACCACTCACCTGCTTAGCTACCGCCCGGAGATACGCTGCGACCTGTGCTGCAAGGTCTTCACCACGGACCGCAATCTCCGTCGACACGTGGCCATGCTCCACAACCCAGATTTCGAGTATCTCACTTGCGATATGTGCAAAAAAATCTTCAAGGGCAAAGATTCGCTCATCACTCACATCCAAACGGTGCACGCGCCATTGAAGGACCTCATAAAATGTCAGGAGTGCGACAAAATTTACACTAACAAGAGAAATCTGAAGCGCCACATCGAAATGAGTCACGAGAAGAGAGTGGAGTTCAAATGTTCCAAGTGCACGAAATCTTATACGTCGAAGCAGAGCTTGAAACGACACCTGCAAAGTATGCATTCAGACAGTCACCACAATTACTCGCAGTTAATTCGTCCCATTTCCACTGAAGGCAAAGATGACACAAACTTTTCAATGGATGTTTCAACGGAGGAGTACGAAAGAAACAGTGAACCTCGACCCAAAAATCTGAAGGATCGTATTGTTTGCGAAATTTGCTTTAAACCATTCTCCGAAGAAGCGCAGCTACGAAAACACATAAAAGGAACACATACATTCCAGGACTTCTATAAATATTGTAAGAAAGTTTTACTGCTGAGATCCGGCGACATCACAACGGAAAGCGGTAAGAAGAAATGCCACAACTGTGATTTGTGCTCCGACTACTTCGCGAGTGCGACCGAGCTGACGCAGCACATCGCAGCCAGTCACGACAGAGAGTATCATCCGTCTACGTGTAACGTTTGCTTTCGACGTTTCTACAGCAGGCAGTCGATCGCGGAGCACAGGAAAGTGTGCATCCCTCCAGCGGACGCCAACCCCTGTAGCCACTGCGACAAGTTGTTCACCGACGTCTCGAGTCTGGAGTTTCACATTAAAATATTTCATCCGCAAGCGCAGATCGCGGATTCTAACGTCTCATCGACTTTCGTGGAGGAGCCCGCAGAGACCATATTCAAATGCAGTCACTGCGAGAGAGTATACTACGCCGAACGCTCCCTTCGACACCACGTCAAATTAAAACACACCCTGGACAAGGAGGTCCAGTGCCAGCTGTGCGGCAGGATCTGCAGCAACAAGTACTACCTCGCGTCGCACATGAAGATAGTGCACAGCGACGACAACTGGTCCAATTGCAAGTACTGCGGGAAACAGTTCAAAACCAAGAGGAACATTCGACGCCACATCGAGTTCACTCACCTGGGCCGGCAGAGGTACAAGTGCATCGCTTGCGAAACTCTGTTCAAGGAGAAGCGAAGTTTGAGAAAGCACGTGCGCATAAAACATCCCAACTCCGATCTATTCCCGCAGTGTCACATCTGCATGAAGCGATTCGAGTCTGCCAAGTCTTGTAAGATCCACCTGAAGCTTCTACACTCGTTCAACATGAACACGTTCCCGTGTGGGATGTGCACCATGTCGTTCACGTCCCAGGAGGCGTTGGACGACCACGTGGCCGCCCAGCACCTTGCCGAGAACGAGATCTACAAGTGCGAGGACTGCAACCTCATCCTCGAGGGCCAGGCGATATACGACCGGCACCGGGAGACGCGCCACGCGGGCCCCAGGAGCGAGCAGAGCCGCCAGCTGCCGCGCTGCATACTCTGCGACAAAGACTTCAGCTCGCGGAAGACCCTTAAGAGGCACATCAAAAATTTCCACAAAGATTTCGATGACGACGATTTGGCGAGCCTCTGCCATAAGCGACCCGCCAGCGTCGAGTGCCCGGACTGCATCAAAAACTTCACCGACGACTACTACTACAACGCGTATCAGAAAGTCAAGGACATCCCCGACGCGGTGGTGTTCAAGTGCGAATTCTGCAAGGCCTCCTACGGCTGCTTCGAGTATCTGGTGCTGCGGCACAAACAGAACTTCGATATAACCCGAAGTAAACATTATTTGAGTGAGCTGTGTACGGCGGAGATGAGCGAGGAGTCCGATGAGGACACGGGGCCGATGACGGCGGACTACGAGAGTACTGTAATGGAGCCCGAGAGTACCACAATTGACGTGAAGGTGGAGTCACCGCAGATATTAGATTGTGACGTCAAAGAAGAACCACAGTCCCCGTAG
- Protein Sequence
- MFCEKLYLTGLFCKKEMSSSEEYCDKPKEYICDYCSRSFTRYYNLQTHIENCHLNSSCCCEICYQSFGSPAGLQQHLSRGHNRFGQGLPECDICGRIYARKQNIATHMLTTHLLSYRPEIRCDLCCKVFTTDRNLRRHVAMLHNPDFEYLTCDMCKKIFKGKDSLITHIQTVHAPLKDLIKCQECDKIYTNKRNLKRHIEMSHEKRVEFKCSKCTKSYTSKQSLKRHLQSMHSDSHHNYSQLIRPISTEGKDDTNFSMDVSTEEYERNSEPRPKNLKDRIVCEICFKPFSEEAQLRKHIKGTHTFQDFYKYCKKVLLLRSGDITTESGKKKCHNCDLCSDYFASATELTQHIAASHDREYHPSTCNVCFRRFYSRQSIAEHRKVCIPPADANPCSHCDKLFTDVSSLEFHIKIFHPQAQIADSNVSSTFVEEPAETIFKCSHCERVYYAERSLRHHVKLKHTLDKEVQCQLCGRICSNKYYLASHMKIVHSDDNWSNCKYCGKQFKTKRNIRRHIEFTHLGRQRYKCIACETLFKEKRSLRKHVRIKHPNSDLFPQCHICMKRFESAKSCKIHLKLLHSFNMNTFPCGMCTMSFTSQEALDDHVAAQHLAENEIYKCEDCNLILEGQAIYDRHRETRHAGPRSEQSRQLPRCILCDKDFSSRKTLKRHIKNFHKDFDDDDLASLCHKRPASVECPDCIKNFTDDYYYNAYQKVKDIPDAVVFKCEFCKASYGCFEYLVLRHKQNFDITRSKHYLSELCTAEMSEESDEDTGPMTADYESTVMEPESTTIDVKVESPQILDCDVKEEPQSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744968;
- 90% Identity
- -
- 80% Identity
- -