Gale010552.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glaucopsyche alexis
Gene Symbol
-
Assembly
GCA_905404095.1
Location
FR990046.1:13605862-13620519[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0024 0.26 12.9 9.4 1 23 198 220 198 220 0.97
2 13 5.5e-06 0.0006 21.2 0.3 3 23 234 254 233 254 0.97
3 13 6.2e-05 0.0067 17.9 1.3 2 23 263 284 263 284 0.98
4 13 0.00015 0.016 16.7 1.9 1 23 290 312 290 312 0.98
5 13 1.2e-05 0.0013 20.2 0.5 1 23 318 340 318 340 0.98
6 13 1.5e-05 0.0016 19.9 8.3 2 23 347 368 346 368 0.97
7 13 2e-05 0.0022 19.4 0.5 1 23 374 396 374 396 0.97
8 13 6.8e-06 0.00074 20.9 1.8 1 23 402 424 402 424 0.98
9 13 0.00086 0.094 14.3 1.6 1 23 430 452 430 452 0.98
10 13 0.0018 0.2 13.3 2.0 1 23 458 480 458 480 0.97
11 13 1.5e-06 0.00016 23.1 0.1 1 23 486 508 486 508 0.97
12 13 7e-06 0.00076 20.9 0.3 1 23 514 536 514 536 0.99
13 13 0.00068 0.075 14.7 3.1 1 23 593 615 593 615 0.99

Sequence Information

Coding Sequence
ATGGCTACTTTAAATAAGACACCGAAATATAACTTTGCGAAAATTTGTCGTGCCTGCTTACAAATCAAGAAGGACATGCGGCCTTTATTCGAACAGCTTACTGCAACAATGTTGATGGACATATCAAAAGTGCAGGTTTCAGTCGGCGATGGCCTCCCCCTGCAATTATGTCTGCAATGTGTGCATCAAATCTCTAGGTGCCATGCTTTCAAAGAGATGGTCGAGAAAAATGATGGCATATTACATGAACAAGCTAAAgctatggcagaagaaacactTAAAATTAATAACCAGatgGAAATAGATAAAGCGCTGAGTTTAAATTGTGGTGACTCCTCACAGTTTATAAAGTTCATGGAAGTCCCACCTCTAGGCAATAATCCAAACCAAATTCTTGATGGATTCTTCACTGACACAGTACCTGAACAGACCGTTACGCAAGAGGTACTTCAAAAAAACGAATTCGATGTTGATAAGatgTCACAGCCACCGTCCaagaaagaaaaagaagatGATGTGTTGAATTCAGACGAGGAGAACTATTTGCAAATGGTTGTGTTCCAAGGCAACTCGGCAGTTGGTCCCGGCCAGCACGTCTGTAATCTCTGCCACAAAAAGTTCAAACATGCCAGGTGGTTGAAACTCCATATGCACTCACACACAAACTGGATTAAAGCTAACTGCAAGAAACCACCCATGTGTGCTATCTGTGACAGAACCTTCAAGGGACCTGGTATGTTAAAAATGCACATGCGCACCCATGAGCAACGCCCGCCCAAGCCACCAACATGTTCAGTCTGCCAGAGAGTTTTTCCGTCCAAGACACTTCTGTACAGACACAGACAAACTCATTTTGAACAAAAGACACACCAGTGTACAGTGTGCGAGAAAAGGTTCTACAGTGGATACGCTCTGCGCTCACATATGGCGCGGCATAGAGGGGAGAGACCGTACGTTTGCGCTATTTGCTCCAAGAGCTTCTACAACCCGACGGATTTAAAGGTCCACTTCAGACTGCACACAGGCGAGAAGCCGCTGAAATGTTCAGAGTGCAACAAGTCGTTCCGGCGACACTCGACGCTGTGCCAGCACATGAAAAAACACCGCGGCATACGGAACCACATCTGCGACGTGTGCAATAAAGCCTTCTACGAGGTGTCCAAACTGAACGCGCATATGAGGGTGCATACAGGCGAGCGGCCGTTCTCGTGCCAGTTCTGCGATCGCAAGTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCGTACGCGTGCAAGCTCTGCCCCGCGCGCTTCACCACCTCCTCCGCGCGCAACAACCACCTGCACACGCATACTGGACACAAGAAATTCGTGTGTCCCGTCTGCTTCAAGGGCTGCACGTCGCGGACGGAGTTGCGCGTGCACTCGAGCAAGCACACAGGCGAAAAGCTGTTCGCGTGCGAGGTGTGCGGGCAACGGTTCAGCTCGCCCTCCTACCTCGCCGTGCACCGCCGCGTGCACACCGGCGAGAAGAAGTACGAGTGCGCCGTGTGCGGGAAAGGGTTCATTGAGTCAAACTCGTACAAAAGGCACATAAAGACACACGAAGTGAAGGACGAAGCGGAACCAGAGGTGACTGCTGACCCGGAACCTACCAAGGAGGACGACGAAGATAAACAGCAAACGAAGGTGGAAATTACCATCGACGGGGAAAACCAGCTCGAGGATCCAATAGCAATACAGACGCAGGAAGAGAATGGCACTCAGAAGAAATACAAGTGTGGGCTGTGCGTCAAGAGCTACATGTACTTACATAGCCTGAAGAAACATATGCTCAGTCATGTGCAGATGTGTGTTGTCACCCCCGACGGCACGGAGAGACTGTATTTTAGGCAACAACAGCAGGACTTACAGCAGCAGCAACAACAGCAGCAGCAACAACAACAGcatcaacaacaacaacaacagcagcagcaacaacaacaacaacaacaacagcagcagcagcaacaCGTACATCTCCAGCAGCAGCAGGTGCAGCAGCTGCAGCAGCAGGTGCTGCAGGTGGGCGGCGTGCAGCAGCTTACGGTGCCGATTCACGCGCAGCACATGCAGCCCGCTATTACTGTCTCCGGAATACAGGGTAGCCAACAGTATCCTGTGATCTCTTCGGTGCAGTCTGTTCAACTGCAACAAACTCATCACATCAACACGCAGCCGCAACACCTGCAGTTGCAGACTATACAGATACACCCACAGCATCAGCCCATACAAATACATGCGGTGGGCGTGCAGCAGGTGCAACAGGAGCAGCTGCATGTGGCTACCTCCAGCTGCCAGTCTATGCTGCCCAACATATTGCAGCTCGGCGGCGGCGCAGTAGCTGTGTCTGGCCTGACACAGGAGCTGGGCGGAGGCGTGGGGGGCGGCGTGCATCGCATCATCCTCCAGCAGCCCGCCACACCCTCGCACCCCGCGCTCTACACCATTCACCACTAG
Protein Sequence
MATLNKTPKYNFAKICRACLQIKKDMRPLFEQLTATMLMDISKVQVSVGDGLPLQLCLQCVHQISRCHAFKEMVEKNDGILHEQAKAMAEETLKINNQMEIDKALSLNCGDSSQFIKFMEVPPLGNNPNQILDGFFTDTVPEQTVTQEVLQKNEFDVDKMSQPPSKKEKEDDVLNSDEENYLQMVVFQGNSAVGPGQHVCNLCHKKFKHARWLKLHMHSHTNWIKANCKKPPMCAICDRTFKGPGMLKMHMRTHEQRPPKPPTCSVCQRVFPSKTLLYRHRQTHFEQKTHQCTVCEKRFYSGYALRSHMARHRGERPYVCAICSKSFYNPTDLKVHFRLHTGEKPLKCSECNKSFRRHSTLCQHMKKHRGIRNHICDVCNKAFYEVSKLNAHMRVHTGERPFSCQFCDRKFAQQSALIYHRRTHTGEKPYACKLCPARFTTSSARNNHLHTHTGHKKFVCPVCFKGCTSRTELRVHSSKHTGEKLFACEVCGQRFSSPSYLAVHRRVHTGEKKYECAVCGKGFIESNSYKRHIKTHEVKDEAEPEVTADPEPTKEDDEDKQQTKVEITIDGENQLEDPIAIQTQEENGTQKKYKCGLCVKSYMYLHSLKKHMLSHVQMCVVTPDGTERLYFRQQQQDLQQQQQQQQQQQQHQQQQQQQQQQQQQQQQQQQQHVHLQQQQVQQLQQQVLQVGGVQQLTVPIHAQHMQPAITVSGIQGSQQYPVISSVQSVQLQQTHHINTQPQHLQLQTIQIHPQHQPIQIHAVGVQQVQQEQLHVATSSCQSMLPNILQLGGGAVAVSGLTQELGGGVGGGVHRIILQQPATPSHPALYTIHH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00787009; iTF_00289026; iTF_00164580; iTF_00404026; iTF_00934047; iTF_00935015;
90% Identity
-
80% Identity
-