Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990063.1:17037921-17040588[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.1e-06 0.00034 22.0 2.6 1 23 87 109 87 109 0.98

2 18 0.035 3.9 9.3 2.6 1 23 116 138 116 138 0.97

3 18 8.7e-05 0.0095 17.5 2.1 1 23 144 166 144 166 0.96

4 18 3.4e-05 0.0038 18.7 2.0 1 23 172 194 172 194 0.97

5 18 3e-05 0.0032 18.9 0.5 1 23 200 222 200 222 0.98

6 18 0.00016 0.017 16.7 1.9 1 23 230 252 230 252 0.98

7 18 1.7e-05 0.0019 19.7 3.0 1 23 258 280 258 280 0.99

8 18 6.5e-05 0.0071 17.9 0.2 1 23 290 312 290 312 0.97

9 18 0.016 1.7 10.4 0.3 1 23 321 343 321 343 0.98

10 18 0.0012 0.13 13.9 6.1 1 23 349 371 349 371 0.97

11 18 0.0047 0.52 12.0 1.7 1 23 377 399 377 399 0.97

12 18 0.58 64 5.4 0.2 1 11 407 417 407 421 0.90

13 18 5e-06 0.00055 21.4 3.3 1 23 436 458 436 458 0.99

14 18 0.0018 0.2 13.3 9.9 1 23 464 486 464 486 0.98

15 18 6.4e-05 0.007 17.9 1.1 1 23 492 514 492 514 0.98

16 18 2.3e-06 0.00026 22.4 2.3 1 23 520 542 520 542 0.99

17 18 1.3e-06 0.00014 23.2 0.6 1 23 550 572 550 572 0.96

18 18 2.7e-05 0.003 19.1 4.2 1 23 578 600 578 600 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.1e-06	0.00034	22.0	2.6	1	23	87	109	87	109	0.98
2	18	0.035	3.9	9.3	2.6	1	23	116	138	116	138	0.97
3	18	8.7e-05	0.0095	17.5	2.1	1	23	144	166	144	166	0.96
4	18	3.4e-05	0.0038	18.7	2.0	1	23	172	194	172	194	0.97
5	18	3e-05	0.0032	18.9	0.5	1	23	200	222	200	222	0.98
6	18	0.00016	0.017	16.7	1.9	1	23	230	252	230	252	0.98
7	18	1.7e-05	0.0019	19.7	3.0	1	23	258	280	258	280	0.99
8	18	6.5e-05	0.0071	17.9	0.2	1	23	290	312	290	312	0.97
9	18	0.016	1.7	10.4	0.3	1	23	321	343	321	343	0.98
10	18	0.0012	0.13	13.9	6.1	1	23	349	371	349	371	0.97
11	18	0.0047	0.52	12.0	1.7	1	23	377	399	377	399	0.97
12	18	0.58	64	5.4	0.2	1	11	407	417	407	421	0.90
13	18	5e-06	0.00055	21.4	3.3	1	23	436	458	436	458	0.99
14	18	0.0018	0.2	13.3	9.9	1	23	464	486	464	486	0.98
15	18	6.4e-05	0.007	17.9	1.1	1	23	492	514	492	514	0.98
16	18	2.3e-06	0.00026	22.4	2.3	1	23	520	542	520	542	0.99
17	18	1.3e-06	0.00014	23.2	0.6	1	23	550	572	550	572	0.96
18	18	2.7e-05	0.003	19.1	4.2	1	23	578	600	578	600	0.97

Sequence Information

Coding Sequence: ATGGAGGTGTTGTCTGTGGTGGAGGAGCATGTGTCTCTGGAGCAGCTGGTTGGCGATCTCTTCCCAGATACCGACGAGCATCTGCCTATACACGATTTCGCTGACATGGAACTGAATCTCACACAGAGCGCGTTCACTAAACCGACAGACTTCATATCAGAACGGAAGAAGACAGAAAATATAAAACAGTTTAGTCTGAGCGAGAAGAAAGAGTCACAGTTTTTCTTTGGTGCGAAAGAGAAGGATAGCACCAAGCTGTTCTCCTGCGATGTATGCGGTCTGAGTTTCTCTTACAGGAGCTAtttgaacaaacacaaaaagAAACACATCGGACAAGAGAATCTCTACAATTGCGATCGTTGCTTCCTAAAGTTTCCCTCGGAAAAACTATTGAAGCAACACAAAACAAAGCACACCGTAACATTTCAACACTTCTGCAGCGTTTGTGACGCAAAATTCACTTCGAAAAGTGGATTACAAGTACACAAAAGGTTGCACGCGGGCGAAAGACCGTTTACGTGTGATTTGTGTCCTAAGAAATTTACTTCCAAAGCATATTTAGACAAACATAAAAAACTACACTCTGCAGAGAAGTGTTACGCTTGTAATATATGCGGTAAACGATTCTCAGCTGACGTGTCTTTGAAGATACATAAAAGGAAGCATGCCGTGAAAAGTACCAGAAGCTACTACTGCGATATTTGCATGAAGAAATTCACATCCGAGAGCTACTTGAAGATTCACAAGAAAATACATGCAgaaaacaaaatattcaaatgtaAAGTCTGCAAAAAGATATTCCGCTCGGAAATATATCTGAAGATACATAGACGAAAGCACGCTTTGCCAAAATCTGATAGCACTTTGTACACTTGTGACGTATGTGACAAAGAGTTTAAGTCTGAGAGCGTTTTGGAGATACACAAAACGGTTCACACTACACACATAGACAAACCTTCGTTCAAATGTGAACTGTGCGGCGTGAGACTGCCGACCAAAGATATATTAGAACGACACAAAAGTAAACACAACGAGCAGAGTTTACACAGATGCACGGTCTGTAACAAAATGTTTGCGTCTAGAAGGTACTTGCATATACATTACAAACAACACCCGGACGACAGGCCGTTCTCGTGTAACGTATGCTACATGAGATTCTCGCTCAACAAATATCTGATCGTCCACAAGAAACTCCACAAGGGCGAGAAGATAAAGCTCTACAACTGTAATGTGTGCCACGAAAAATTCACAGCGAAAATATTGCCAGAACACAAAATAACACACAAACTACTCGGCGACAGACCGTACAAATGCGACATCTGCAGTCTCACCTTCACTTCGAACACACACTTGAAACTGCACCAGAAAATACACACACAAACGACTGTATACAAATGCGAACACTGCACGATGACGTTTAAAAAGAAATGGCACCTACACAAACACGAAAAGTCGCACACGGACGTCAAACCGTACATCTGTGACGTCTGTCAGATGAGCTTCCGTTACAAAAGTCACGTGACGGTCCACGTCCAAATTCACATGAATGCCAAACCTTTTCGTTGTAAGGTGTGCTTCAGACGGTTCCCCAATAACAGTGGTCTGAAACGTCACCAACTTACGCATAAGAAGGTGAAAGATAAGCCCCACGAGTGTGAGGTTTGCGGCCAAGCGTTCGTGCGTAACAGCGACCTCAAAAGACATTCTCGAGCGCACACCGGCGAGAGGAAGTACGCGTGCGATCAGTGCGATAAAAAGTTTTCGCAGAACTGCAATTTGTTGAGACACAAGAAGTTACATGAAACAAACTCGATTAAATAG
Protein Sequence: MEVLSVVEEHVSLEQLVGDLFPDTDEHLPIHDFADMELNLTQSAFTKPTDFISERKKTENIKQFSLSEKKESQFFFGAKEKDSTKLFSCDVCGLSFSYRSYLNKHKKKHIGQENLYNCDRCFLKFPSEKLLKQHKTKHTVTFQHFCSVCDAKFTSKSGLQVHKRLHAGERPFTCDLCPKKFTSKAYLDKHKKLHSAEKCYACNICGKRFSADVSLKIHKRKHAVKSTRSYYCDICMKKFTSESYLKIHKKIHAENKIFKCKVCKKIFRSEIYLKIHRRKHALPKSDSTLYTCDVCDKEFKSESVLEIHKTVHTTHIDKPSFKCELCGVRLPTKDILERHKSKHNEQSLHRCTVCNKMFASRRYLHIHYKQHPDDRPFSCNVCYMRFSLNKYLIVHKKLHKGEKIKLYNCNVCHEKFTAKILPEHKITHKLLGDRPYKCDICSLTFTSNTHLKLHQKIHTQTTVYKCEHCTMTFKKKWHLHKHEKSHTDVKPYICDVCQMSFRYKSHVTVHVQIHMNAKPFRCKVCFRRFPNNSGLKRHQLTHKKVKDKPHECEVCGQAFVRNSDLKRHSRAHTGERKYACDQCDKKFSQNCNLLRHKKLHETNSIK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289012;
90% Identity: iTF_01178857;
80% Identity: -