Glac017486.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578277.1:32224125-32228053[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00037 0.062 15.4 2.9 2 23 211 233 210 233 0.96 2 15 6.3e-05 0.011 17.8 0.2 1 23 239 262 239 262 0.98 3 15 0.88 1.5e+02 4.8 4.9 1 21 268 288 268 291 0.92 4 15 0.0025 0.41 12.8 0.1 1 23 297 320 297 320 0.95 5 15 1.4 2.4e+02 4.1 0.2 1 23 326 351 326 351 0.95 6 15 0.00036 0.059 15.4 2.3 1 23 363 386 363 386 0.97 7 15 2.5e-05 0.0041 19.1 3.7 1 23 392 415 392 415 0.98 8 15 0.74 1.2e+02 5.0 0.3 1 23 421 444 421 444 0.95 9 15 0.16 27 7.1 0.1 1 23 449 472 449 472 0.89 10 15 0.016 2.7 10.2 0.2 1 23 478 501 478 501 0.95 11 15 0.0054 0.9 11.7 1.4 2 23 508 530 507 530 0.94 12 15 0.00025 0.042 15.9 5.2 1 23 536 559 536 559 0.98 13 15 1.1e-05 0.0019 20.1 2.0 1 23 565 588 565 588 0.96 14 15 0.05 8.3 8.7 0.3 2 22 595 615 594 617 0.89 15 15 5.6e-05 0.0092 18.0 2.6 1 23 624 647 624 647 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATAACAAACTTGACTATGAAAATTCTGGGTCAAAATCAGATGATAAAACAGGTGTGGGTGATATAATTGTAGCTATATCTTCTCAAAGTGATGGAAATATTAAAGAGACTTCACGATCTGATGACTGTCCTAGCACTACTGTGCTGAAGAGCACAAATAGTACTCAGCAGGTGCACAGTTATCAAGCCAAGGACTTACCAAGCCAACAGAGGAATATTATTACAAGTTTGACTTCAGCATCAccttgtaaaataaacaaaatgttggGTATTAGAGATGATGTTTCTATAACTATTAGGAATGCACAGCAGTCAACACCATGTTGGTCTTCGATTAACATTAAACAGGAGTTAGAAGAACAAACTGTGTCTTCTTTAATATCTTCGCCtgtgaagaagaaaataaaggagGAATTTGACATTAAAACTAAGAAGATTCTGATGGAGGAGTGCACCGTGGAACCTATGCCTAATGTCAAGCTTGTGCAGGACCGCTTGGATAAGAACCAAGTGACTTCTTCCTCCTACTTGAGGAACATGATGATCCCTGATGTCATACTTGTATCAGGAGTGAAAGCGGACCAGTGTGCTAAAGACAAGGTGCGAGGGAGGAAGAAGTCCATGCAATGCTCTCTGTGTCCCTACTCCTGTAGAGACAAAAATTATCTGAGGAAACATGTGAAGCGTGTTCACTACACTAACAAAACGTATAAATGCAACCTGTGTCCATTCAGCTCTAACGATCAGAACGAGTTGTGGGCCCACATTAGGTCTACCCATGGTGAAGAGAAGCCATTCCTGTGTACAGAATGTTTATACAGCTCCACTACTAAAGCCAAGCTTAAAGATCACATCAATTGTTGCCATGTCGCAGTTAAGCCTTACCAGTGTCCTCAGTGCGAGTACAGTGCTGGGAGAAGGAGCTCTATGAGGCTTCACATGGGAGTCATTCACCGCACAGAGATGCTTTTCAACTGTCCTCAGAAGGGCTGTTCTTTTACCTCAAGGTACAAACCTTCCATTGCTGTACACTTGAACTCGGAACATAAAGACGAAATGTCACTTAGAGGAGAGAAGAAATTTGAGTGTTTCTACTGTTCACAAAAGACCACACGAAAAACTGCTTTGAGGAACCATATAAACTCACAACATCTGGGTATCAAGCCTTACCAGTGCCCTCACTGTCCTTACAGGGTGACATACGTCAGCCATCTCAAGAAGCACATAAAAAAAGTCCATAAGAATGGAGAGATGTTCAAGTGTTTCATCTGTCCTTTCACTGCCCCTATCAGGACGGAAGTCAAGAACCACCGTGATACTGTCCATGGTGACAAACCCTTTGCTTGCCCTCACTGCCCCTACAAGACTGCAGCCAGGACTAAACTGGCTGAGCATGTTAGTGCGGTACATAATGGAGAGAGGCCATTTGCCTGTTCTCAGTGTCCTTACAGAACAGGTAGGATGTACAGTCTCAAGGCCCATGTTGTCACTGTccatttgaaagaaaaaaacatatctTGTCCTCACTGCAAATACAAAACGGACAAGAAATACTACTTAGACAAGCATATAAATGCCGTGCACAAGAGAGAGAGACCATTCCAGTGCCAGCTTTGCGGACACTCAGCCAGTTCCAACCACCACCTCAAGAGACATGTCAATACTGTCCACAAGAAGATACGCCCTTTCCAATGCCACTATTGTGGACATGGTGCCAGTAACAAATCCaatttgaaaatacatattaaccTGGTTCACAGCGAAGACAAGTCATTACAGTGCGTTAAATGCGGTCACGTTGCAGAAAACAGAACTGAACTTAAGAACCACGTGGGCCAGGTTCACGGCAAAGTGATTGGGCTTTATCAGTGTCACCGCTGTGGACACACTGCAAGCAACAAATCCAACCTCAAGATACATGTCAACCTGGTACATGGGGATTAG
- Protein Sequence
- MEDNKLDYENSGSKSDDKTGVGDIIVAISSQSDGNIKETSRSDDCPSTTVLKSTNSTQQVHSYQAKDLPSQQRNIITSLTSASPCKINKMLGIRDDVSITIRNAQQSTPCWSSINIKQELEEQTVSSLISSPVKKKIKEEFDIKTKKILMEECTVEPMPNVKLVQDRLDKNQVTSSSYLRNMMIPDVILVSGVKADQCAKDKVRGRKKSMQCSLCPYSCRDKNYLRKHVKRVHYTNKTYKCNLCPFSSNDQNELWAHIRSTHGEEKPFLCTECLYSSTTKAKLKDHINCCHVAVKPYQCPQCEYSAGRRSSMRLHMGVIHRTEMLFNCPQKGCSFTSRYKPSIAVHLNSEHKDEMSLRGEKKFECFYCSQKTTRKTALRNHINSQHLGIKPYQCPHCPYRVTYVSHLKKHIKKVHKNGEMFKCFICPFTAPIRTEVKNHRDTVHGDKPFACPHCPYKTAARTKLAEHVSAVHNGERPFACSQCPYRTGRMYSLKAHVVTVHLKEKNISCPHCKYKTDKKYYLDKHINAVHKRERPFQCQLCGHSASSNHHLKRHVNTVHKKIRPFQCHYCGHGASNKSNLKIHINLVHSEDKSLQCVKCGHVAENRTELKNHVGQVHGKVIGLYQCHRCGHTASNKSNLKIHVNLVHGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743035;
- 90% Identity
- -
- 80% Identity
- -