Gbue029098.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ652026.1:221184-226250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00046 0.063 15.3 3.1 2 23 214 236 213 236 0.97 2 15 4.4e-05 0.006 18.5 0.3 1 23 242 265 242 265 0.98 3 15 0.016 2.2 10.4 2.6 1 23 271 294 271 294 0.94 4 15 0.00083 0.11 14.5 0.1 1 23 300 323 300 323 0.95 5 15 0.96 1.3e+02 4.9 0.7 1 23 329 354 329 354 0.95 6 15 0.0032 0.43 12.7 5.2 1 23 366 389 366 389 0.97 7 15 0.0012 0.17 14.0 2.4 1 23 395 418 395 418 0.98 8 15 0.57 77 5.6 0.1 1 23 424 447 424 447 0.96 9 15 0.19 26 7.1 0.1 1 23 452 475 452 475 0.89 10 15 0.019 2.6 10.2 0.2 1 23 481 504 481 504 0.95 11 15 0.0065 0.88 11.7 1.4 2 23 511 533 510 533 0.94 12 15 0.00066 0.09 14.8 6.1 1 23 539 562 539 562 0.98 13 15 1.4e-05 0.0018 20.1 2.0 1 23 568 591 568 591 0.96 14 15 0.17 23 7.2 0.3 2 22 598 618 597 620 0.88 15 15 8.1e-05 0.011 17.7 3.5 1 23 627 650 627 650 0.96
Sequence Information
- Coding Sequence
- ATGGTAGATAAACTTGAAGATGTAAATGCCGTGTCAGAATCAGATGATAAATCAgGTGTGGGTCATGTAATTGCAGCTTCATCTTCCCAAATTGATGGAAATATTAAAGAGACTTCTCGATTTGATGATTGTCATAGCACTACTGTGCTAATATGCACACGTAGTTCTCAGCAGGTGCACAGTTACCAAGCCAAGGACTTACCAAACCAACAGAGGAATATTATTACAAGTTCGATGTTGCCATCACTTAAAATAAACGAGATGTTGGGTATTAGAGATGATGTTTCTATATCTATTAGGAATGTATCACAGTCAACACCTTGTTGGTCAACGGTCAACATTAAAAAGGAGATGGAAGAGCAAACTGTGTCTTCTTCAATATCTTCGCCTgtgaagaagaaaattaaagaggaaTTTGACATTAAAACTAAGAAGATTCTGATGGAGGAGTGCACCGTGGAACCTATGCCTAATGTCAAGCTTGTACAGGACCGCTTAAATATGAACCAAGTGACTTCTTCCTCCTACTCGACGGAAGACTTTAATCTCAACATGATGATCCCTGATGTCATACTTGTAtcagGTGTAAAAGTGGACCAGTGTGCCAAAGACAAGGTGCGAGTGAGGAAGAAGTCTAACCAATGCCCTCTGTGTTCCTACTCCTGTAGAGACAAAAATTATCTGAGGAAACATGTGAAGCGTGTTCACTACTCTAGCAAAACTTATAAATGCAACCTTTGTCCATTCAGCTCTAACGATCAGGACGAGTTGTGGACCCACATTAGGTCTACCCACGGTGAAGAGAAGCCATTCCTGTGCACAGAATGTTTATACAGCTCCACTACTAAAGCTAAGCTTAAAGATCATATCAATTCTTGTCATGTCGCAGTCAAGCCTTACCAGTGTCCTCAGTGTGATTACAGTGCTGGGAGAAGGAGCTCCATGAGGCTTCACATGGGAGTCATTCACCGCACAGAGATGCTTTTCAACTGTCCTCAGAAGGGCTGTTCTTTTACCTCAAGGCACAAACCTTCTATTGCTGTACACTTGAACTCGGAACATAAAGAGGAAATGTCACTTAGAGGAGATAATAAATTTGAGTGTTTCTACTGTTCACATAAGACCACACGTAAGAACTCTTTGAAGAACCATATAAACTCACAACACCTGGGTATCAAGCCTTACAAGTGCCCTCACTGTTCTTACATGGTGTCATACGACAGCCAAATCAAGAAGCACATAAAAAAGGTTCATAAGAATGGAGAGATGTTCAAATGTTTTATCTGTCCTTTCACTGCCCCTATCAGGGCGGAAGTCAAGAACCACCGAGAGACTGTCCATGGTGACAAACCCTTTGCTTGTCCTCACTGCCCCTACAAGACTGCAGCCAGGACTAAACTGGCAGAGCATGTTAGTGCAGTTCATAATGGAGAGAAACCCTTTGCCTGTTCTCAGTGTCCTTACAGGACAGGTAGGATGTACAGTCTTAAAGCCCATGTTGTCACTGtccatttgaaagaaaaaaacatctcTTGTCCTCACTGCAAATACAAAACGGACAAGAAATACTACTTAGACAAGCATATTAACGCAGTGCATAAGAGAGAGAGACCGTTCCAGTGCCAGTTTTGCGGACACTCAGCCAGTTCCAACCACCACCTCAAGAGACATGTCAATACAGTCCACAAGAAGATACGCCCTTTCCAATGCCACTATTGTGGACATGGTGCCAGTAATAAATCCAACttgaaaatacatataaacCTGGTTCACAGCGAAGACAAGTCATTACAGTGCGTTAAGTGCGGCCACATTGCAGAAAACAGAACAGAACTTAAGAACCACGTGGGCCAGGTTCATGGTAAAGTGATCGGGCTTTATCAGTGTCACCGCTGTGGACACAACACAAGCAACAAATCCAACCTCAAGATACATGTCAACCTGGTACATGGGGATTAG
- Protein Sequence
- MVDKLEDVNAVSESDDKSGVGHVIAASSSQIDGNIKETSRFDDCHSTTVLICTRSSQQVHSYQAKDLPNQQRNIITSSMLPSLKINEMLGIRDDVSISIRNVSQSTPCWSTVNIKKEMEEQTVSSSISSPVKKKIKEEFDIKTKKILMEECTVEPMPNVKLVQDRLNMNQVTSSSYSTEDFNLNMMIPDVILVSGVKVDQCAKDKVRVRKKSNQCPLCSYSCRDKNYLRKHVKRVHYSSKTYKCNLCPFSSNDQDELWTHIRSTHGEEKPFLCTECLYSSTTKAKLKDHINSCHVAVKPYQCPQCDYSAGRRSSMRLHMGVIHRTEMLFNCPQKGCSFTSRHKPSIAVHLNSEHKEEMSLRGDNKFECFYCSHKTTRKNSLKNHINSQHLGIKPYKCPHCSYMVSYDSQIKKHIKKVHKNGEMFKCFICPFTAPIRAEVKNHRETVHGDKPFACPHCPYKTAARTKLAEHVSAVHNGEKPFACSQCPYRTGRMYSLKAHVVTVHLKEKNISCPHCKYKTDKKYYLDKHINAVHKRERPFQCQFCGHSASSNHHLKRHVNTVHKKIRPFQCHYCGHGASNKSNLKIHINLVHSEDKSLQCVKCGHIAENRTELKNHVGQVHGKVIGLYQCHRCGHNTSNKSNLKIHVNLVHGD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743983;
- 90% Identity
- -
- 80% Identity
- -