Basic Information

Insect: Gerris lacustris
Gene Symbol: -
Assembly: GCA_951217055.1
Location: OX578285.1:51146970-51161221[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.96 1.6e+02 4.6 0.2 1 23 444 466 444 466 0.92

2 18 0.063 11 8.4 3.0 1 23 472 494 472 494 0.98

3 18 0.031 5.1 9.3 1.7 1 19 503 521 503 523 0.95

4 18 0.052 8.7 8.6 4.0 2 23 534 555 534 555 0.91

5 18 0.0022 0.37 12.9 1.0 3 23 564 585 563 585 0.92

6 18 8.7e-06 0.0014 20.5 3.9 1 23 594 616 594 616 0.96

7 18 1.2e-07 2.1e-05 26.3 0.5 1 23 625 648 625 648 0.97

8 18 0.052 8.6 8.6 0.1 1 23 658 681 658 681 0.96

9 18 0.039 6.4 9.0 5.8 1 23 699 721 699 721 0.97

10 18 0.63 1.1e+02 5.2 6.1 1 23 727 750 727 750 0.95

11 18 0.0015 0.25 13.5 0.3 1 23 768 790 768 790 0.97

12 18 0.007 1.2 11.4 1.4 1 23 796 819 796 819 0.90

13 18 1.5e-06 0.00025 22.9 0.8 1 23 835 857 835 857 0.98

14 18 1.8e-06 0.0003 22.7 0.5 1 23 863 885 863 885 0.98

15 18 0.0036 0.59 12.3 0.6 1 23 891 913 891 913 0.98

16 18 0.001 0.17 14.0 3.4 1 23 919 941 919 941 0.98

17 18 8.1e-05 0.013 17.5 3.3 1 23 947 969 947 969 0.99

18 18 5.4e-05 0.009 18.0 1.0 2 23 976 998 976 998 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.96	1.6e+02	4.6	0.2	1	23	444	466	444	466	0.92
2	18	0.063	11	8.4	3.0	1	23	472	494	472	494	0.98
3	18	0.031	5.1	9.3	1.7	1	19	503	521	503	523	0.95
4	18	0.052	8.7	8.6	4.0	2	23	534	555	534	555	0.91
5	18	0.0022	0.37	12.9	1.0	3	23	564	585	563	585	0.92
6	18	8.7e-06	0.0014	20.5	3.9	1	23	594	616	594	616	0.96
7	18	1.2e-07	2.1e-05	26.3	0.5	1	23	625	648	625	648	0.97
8	18	0.052	8.6	8.6	0.1	1	23	658	681	658	681	0.96
9	18	0.039	6.4	9.0	5.8	1	23	699	721	699	721	0.97
10	18	0.63	1.1e+02	5.2	6.1	1	23	727	750	727	750	0.95
11	18	0.0015	0.25	13.5	0.3	1	23	768	790	768	790	0.97
12	18	0.007	1.2	11.4	1.4	1	23	796	819	796	819	0.90
13	18	1.5e-06	0.00025	22.9	0.8	1	23	835	857	835	857	0.98
14	18	1.8e-06	0.0003	22.7	0.5	1	23	863	885	863	885	0.98
15	18	0.0036	0.59	12.3	0.6	1	23	891	913	891	913	0.98
16	18	0.001	0.17	14.0	3.4	1	23	919	941	919	941	0.98
17	18	8.1e-05	0.013	17.5	3.3	1	23	947	969	947	969	0.99
18	18	5.4e-05	0.009	18.0	1.0	2	23	976	998	976	998	0.96

Sequence Information

Coding Sequence: ATGAAACTGAAATTAAAGAATACCTCTGGAGAATCGGTCACCCTCATTATCAAACCGGAGGACACATTCGTCGATTTAAGGGAAAGAGTAGCAGAAGAACTTGGATTACGATTAGATCTAAGTGATATTGTAAATGGAGAACATTATTTGGAATCACAAAGAGTATTGGATTTCTTTTCACAGTTACCTACGGAGGAAGGAGAGAATTCTTTAATAAGTACCGTACACGCTAACATTGAATGTATTGTCCCTGGTTGtaacaaaaagaaaagtacCCACCcggaaaattgtttttttgaatTTCCCACTGAAGAAATCAGGAATCATCAGTGGGCTCTATATTGCCAAAGACTTCTTGGAGAATATGGGAAAAAACGGATAAACATTTCATCTTGTTCACGGATCTGCTCCGATCATTTCAAAGCAGAGCAATTCGTTAAAAATGCGTCCACCATCTTAAAAAAGACTGCTGTACCTTGTATAAACCCGGAGGTGGgtcccgggaaaaattttaatcaaaaatctattttaaccGATTTCGGTGAAACTGGTAGTACCGGGATGACTAACTACACAATGGACAATGGCTCTTCAATTGAATTCGattcttcatttttaattcAGCTAAAGAaagATAAAAAGCCATTTTGTCGATTATGTGCGAGATATACGAACAACTGCATTTACATATTTGATGAAGAAGAAGATTCAGAAGAAGTCAGTTTAATTACCAAAATCAATTCATGCTTGCCTCTTGCTATCGATGAATCTGATCCCTTGCCAAAGCAAATTTGTTCACAGTGTTTTACAATTGTCGAAAAATGCTTCAAATTTTCTGAAACTGCAGTTGAATCTCATTTTAAGTTGAAAGAAAGGAAAAGAACAAAATATCTGAAAGGGTTATCTGTGCTTGCTACATCAAGGGGTAGTGAAGCCAAAGGAACTGTGGACATGTCAATATTGTGTGACTTCACTGATGAACATCAGTCAGGAGTGAGAAGCGTATGTCAACTGTGTCAGCATGGCAAAATGACGCATTCTTCTTGTTCGTCATTTTCTGAAAAACTCATAGCCCCGTATGACTCCGAATTGTATGAATCGGACTGCAGCAATGATTATAATTATCCGAGTAACGATTTTGATCATTGTGATTTAGGAAATATGAGTGTAGACAGTGTTTTATCGATTAGAagtgtagataaaataaattgcctGAAACCCGATTTGTCCGATGTTAACGGTGATTACTCCCCTGGTAAATTGAGGTCAGAacctaaaatgataaaaaactcTCCTGACAATTGGGAAGCTGCAGATAATGCATTTGGATTCTCCTGTATGTTATGTTCAGCTGATTTCAGATCATCTGCTGATTTATTTCCTCATTCGTTAATGCATTCCGAGGACGGCAGTTACGTGTGCTGTTTGTGTAACTTAGTGTGCGACTCCAAAAATGATCTTGCCATTCATTTTAAAAGTCACAGTGTTGCGCCACCTGACATGATATACCAGTGTAATCACTGCGGTATGGGATCTAGGGATCTGTCTTCATTTGAAATGCATAGCTGCCCGTTGAATTCTTCTACTTGGACATTAAACCGTTGCAATGTTTGtaataaaacgtttaggtctgaaAGCAGACTGAGATTCCATAAAAAATTTCATGAAATCGGTGCTAAACCCGGACATTGTGATATGTGCCCTAAAGTTTTCAGTAGTGAAGTAAAACTTTATAAACATGTCACTTACCTTCACGGTCTTGGAAAGGAGCGTAAAAGCCATTGTTGTGAGGACTGCGGCAAAGTATTTCGAACAGTGAGTTCTTTAAGATACCATCAAAGAGCTCATCTCGGAGAGACTTATCTTAGACCTTATTCTTGTGACGTTTGTGGAAAATCATTTGTCAGAAGAAGCATGTTAAGGAACCATATTACGACAGTCCATAAAAATTTGACTATTAATACCGAGTGTTACATGTGTAAGGTTTGCTCTGAACTATTTCCTACCAACGATTCTATCCTACTACATCTTGAGAAGCTCCACCCCATGATGAACAGTGAAACTTGTTACGAGACTTATACTTTAAACCGAGTTTATATCTGTGAATTCTGTAAGCGATGTTTTGCATCATCGTTACACGTTAATAATCATCGAAGTAAACATAGAACTGATACTCCGTACGAGTGTAAGCACTGCGTCGGTGAATTTTGTTATAGTAGAGAATTGGAGGCTCACCACTTGCACGAACATTCCGACTCAATCGCCAAAGAATACGTAATAGATTTTCCAATACCGGCTATGTTCGTCTGTGAATATTGTGACAGAGCTTTTGTCAGCTTGTTAAAATATACAGAGCATTTAACTGTGCATTACGGTCCTACACCTTATTTGTGTCGTTATTGTGACGAAAGATTTTCTTATCTCGGGGACCTCTCTTCTCACCGTAGCTTTAAACACGGGGATACCGATCTGATTAAAAACGATTCAAACTATTATAGACCCTTCGAGTGTCATTATTGCAATAAGTCATTTGCTATCGAGGACGCTTTAATCAAGCACATTCGAATGCACACAGGAGAAAAACCGTTTATTTGTGATCAGTGTGGCAAGGGATTTTCTCAGAGCTCCGGTTTATATACTCATCAAAAAGTCCATTCTAACGACAGGCCATATACGTGTTCTATCTGTCCtagaaaattcaaaataaaaggaGACAGAGATATACATGTGAGAAAACATTCTGGGGAACGCCCTTATAAGTGTGAATTTTGCGGGAAAGCATTTATGACACAACACGTTTATAGTCAACACAGAAAAATTCACACCGGAGAACGTCCTTACAAATGCGATATCTGTCACATTGCTTTTAGAAGGTCTCATGTGTTGACAGTTCACAAGAGAATTCACACAGGCGAGAAACCCAATTCTTGTGATATTTGTGGTAAACGGTACAGGCAAAAGGGTGATATGCTTAAACACAAAAGGATCCAACACGGATCTGGATCTGTGAGGACTGCTCCACCTGGAAATCTGTTGAACTGA
Protein Sequence: MKLKLKNTSGESVTLIIKPEDTFVDLRERVAEELGLRLDLSDIVNGEHYLESQRVLDFFSQLPTEEGENSLISTVHANIECIVPGCNKKKSTHPENCFFEFPTEEIRNHQWALYCQRLLGEYGKKRINISSCSRICSDHFKAEQFVKNASTILKKTAVPCINPEVGPGKNFNQKSILTDFGETGSTGMTNYTMDNGSSIEFDSSFLIQLKKDKKPFCRLCARYTNNCIYIFDEEEDSEEVSLITKINSCLPLAIDESDPLPKQICSQCFTIVEKCFKFSETAVESHFKLKERKRTKYLKGLSVLATSRGSEAKGTVDMSILCDFTDEHQSGVRSVCQLCQHGKMTHSSCSSFSEKLIAPYDSELYESDCSNDYNYPSNDFDHCDLGNMSVDSVLSIRSVDKINCLKPDLSDVNGDYSPGKLRSEPKMIKNSPDNWEAADNAFGFSCMLCSADFRSSADLFPHSLMHSEDGSYVCCLCNLVCDSKNDLAIHFKSHSVAPPDMIYQCNHCGMGSRDLSSFEMHSCPLNSSTWTLNRCNVCNKTFRSESRLRFHKKFHEIGAKPGHCDMCPKVFSSEVKLYKHVTYLHGLGKERKSHCCEDCGKVFRTVSSLRYHQRAHLGETYLRPYSCDVCGKSFVRRSMLRNHITTVHKNLTINTECYMCKVCSELFPTNDSILLHLEKLHPMMNSETCYETYTLNRVYICEFCKRCFASSLHVNNHRSKHRTDTPYECKHCVGEFCYSRELEAHHLHEHSDSIAKEYVIDFPIPAMFVCEYCDRAFVSLLKYTEHLTVHYGPTPYLCRYCDERFSYLGDLSSHRSFKHGDTDLIKNDSNYYRPFECHYCNKSFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSNDRPYTCSICPRKFKIKGDRDIHVRKHSGERPYKCEFCGKAFMTQHVYSQHRKIHTGERPYKCDICHIAFRRSHVLTVHKRIHTGEKPNSCDICGKRYRQKGDMLKHKRIQHGSGSVRTAPPGNLLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743018; iTF_00743808;
90% Identity: iTF_00743018; iTF_00743808;
80% Identity: iTF_00743808;