Basic Information

Insect: Gerris buenoi
Gene Symbol: -
Assembly: GCA_001010745.2
Location: KZ651953.1:188689-195851[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.19 26 7.0 0.3 1 23 247 269 247 269 0.93

2 18 0.11 16 7.8 3.8 1 23 275 297 275 297 0.98

3 18 0.022 3 10.0 2.2 1 19 306 324 306 326 0.96

4 18 0.049 6.6 8.9 4.0 2 23 337 358 337 358 0.91

5 18 0.0021 0.28 13.3 1.0 3 23 367 388 366 388 0.92

6 18 8e-06 0.0011 20.8 3.9 1 23 397 419 397 419 0.96

7 18 1.1e-07 1.6e-05 26.7 0.5 1 23 428 451 428 451 0.97

8 18 0.025 3.4 9.8 0.2 1 23 461 484 461 484 0.96

9 18 0.036 4.9 9.4 5.8 1 23 502 524 502 524 0.97

10 18 8 1.1e+03 2.0 6.1 1 23 530 553 530 553 0.94

11 18 0.00051 0.069 15.2 0.4 1 23 571 593 571 593 0.97

12 18 0.0065 0.88 11.7 1.4 1 23 599 622 599 622 0.90

13 18 1.4e-06 0.00019 23.2 0.8 1 23 638 660 638 660 0.98

14 18 1.7e-06 0.00022 23.0 0.5 1 23 666 688 666 688 0.98

15 18 0.0033 0.45 12.6 0.6 1 23 694 716 694 716 0.98

16 18 0.00096 0.13 14.3 3.4 1 23 722 744 722 744 0.98

17 18 7.5e-05 0.01 17.8 3.3 1 23 750 772 750 772 0.99

18 18 5e-05 0.0068 18.3 1.0 2 23 779 801 779 801 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.19	26	7.0	0.3	1	23	247	269	247	269	0.93
2	18	0.11	16	7.8	3.8	1	23	275	297	275	297	0.98
3	18	0.022	3	10.0	2.2	1	19	306	324	306	326	0.96
4	18	0.049	6.6	8.9	4.0	2	23	337	358	337	358	0.91
5	18	0.0021	0.28	13.3	1.0	3	23	367	388	366	388	0.92
6	18	8e-06	0.0011	20.8	3.9	1	23	397	419	397	419	0.96
7	18	1.1e-07	1.6e-05	26.7	0.5	1	23	428	451	428	451	0.97
8	18	0.025	3.4	9.8	0.2	1	23	461	484	461	484	0.96
9	18	0.036	4.9	9.4	5.8	1	23	502	524	502	524	0.97
10	18	8	1.1e+03	2.0	6.1	1	23	530	553	530	553	0.94
11	18	0.00051	0.069	15.2	0.4	1	23	571	593	571	593	0.97
12	18	0.0065	0.88	11.7	1.4	1	23	599	622	599	622	0.90
13	18	1.4e-06	0.00019	23.2	0.8	1	23	638	660	638	660	0.98
14	18	1.7e-06	0.00022	23.0	0.5	1	23	666	688	666	688	0.98
15	18	0.0033	0.45	12.6	0.6	1	23	694	716	694	716	0.98
16	18	0.00096	0.13	14.3	3.4	1	23	722	744	722	744	0.98
17	18	7.5e-05	0.01	17.8	3.3	1	23	750	772	750	772	0.99
18	18	5e-05	0.0068	18.3	1.0	2	23	779	801	779	801	0.96

Sequence Information

Coding Sequence: ATGACAGTGAGACCTGACTTGTGCACTGCAGGGTTAACAACCGATAAAAAGCCGTTTTGTCGATTATGCGCCAGATACACAAACAACTGCATTTACATATTCGACGAAGAAGAAGATTCAGAAGAAGTCAGTTTAATTACCAAAATCAATTCGTGCTTGCCTCTCGCTATCGATGAATCTGATCCCTTGCCAAAGCAAATTTGTTCACAGTGTTTTACAATTGTCGAAAAATGCTTCAAATTTTCTGAAACTGCAGTTGAATCTCATTTTAAGTTGAAAGAAaggaaaagaacaaaatatcTGAAAGGATTATCTGTGCTTGCTACATCAAGGGGTAGTGAAGCCAAAGGAACTGTGGACATGTCGATATTGTGTGACTTCACCGACGAACATCAGTCGGGAGTGAGAAGCGTATGTCAACTGTGTCAGCATGGCAAAATGACACATTCTTCTTGTTCGTCTTTTTCCGAAAAACTTATAGCGCCGTACGACTCCGAATTGTACGAATCCGACTGCAGCAACGATTACAATTATCCGAGTAACGATTTCGATAATTGTGATTTAGGGAATATGAGTGTAGACAGTGTTTTATCGATTAGAagtgtagataaaataaattgcctTAAACCCGAGTTGTCCGATGTTAACGGCGATTACTCCCCTGGTAAATCGAGGTCGGAACCTAAAACGATAAAAAACTCTCCTGACAATTGGGAAGCTGCCGATAACGCGTTCGGATACTCCTGTATGTTATGTTCGGCGGATTTCAGATCCTCTTCGGATTTATTTCCTCATTCGTTGATGCATTCGGAAGATGGCAGTTACGTTTGCTGTTTGTGTAACTTTGTATGCGACTCCAAAAACGACCTTGCCATTCATTTTAAAAGTCACAGTGTCGCCCCACCTGACATGATCTACCAGTGTAATCACTGTGGTATGGGATCTAGGGATCTGTCTTCATTTGAAACGCACAGCTGCCCGTTGAATTCTTCTACTTGGACGTTAAACCGTTGCAACGTTTGTAATAAGACGTTTAGGTCTGAAAGCAGACTCAGATTCCATAAGAAATTTCATGAAATCGGTGCTAAACCCGGACATTGTGATATGTGCCCTAAAGTTTTCAGTAGCGAAGTAAAACTGTATAAACACGTCACTTACCTTCACGGTCTCGGAAAGGAGCGTAAAAGCCATTGTTGTGAGGACTGCGGCAAAGTATTTCGAACGGTGAGTTCTTTAAGATACCATCAAAGAGCTCATCTCGGGGAGACTTATCTCAGACCTTATTCTTGTGACGTCTGTGGAAAATCATTTGTCAGAAGAAGCATGTTAAGGAACCATATAACGACAGTCCATAAAAATTTGACTATCAATACCGAGTGTTACATGTGTAAGATTTGTTCTGAACTATTTCCTACTAACGATTCTATTCTAATGCATCTTGAGAAGCTCCATCCGATGATGAACAGTGAAACTTCTTACGAGACTTATACTTTAAACCGAGTTTACATCTGTGAATTCTGTAAGCGGTGTTTTGCATCGTCGTTACACGTCAACAATCATCGAAGTAAACATAGAAGCGATACTCCGTATGAGTGTAAGCACTGCATCGGTGAGTTTTGTTATAGTAGAGAATTGGAGGCTCACCACTTGCACGAACATTCGGACTCGATTGCCAAAGAATACGTAATAGATTTTCCGATACCGGCTATGTTTGTCTGTGAATATTGTGACAGAGCTTTTGTCAGCTCGTTAAAATATACGGAGCATTTAACCGTGCATTACGGACCTACACCTTATTTGTGTCGTTATTGTGATGAAAGATTTTCTTATCTCGGGGACCTTTCTTCTCATCGTAGCTTTAAACACGGGGATACCGATCTGATTAAAAACGATTCCAACTATTATAGACCCTTCGAGTGTCATTATTGCAACAAGTCGTTTGCTATCGAGGACGCCTTAATCAAGCACATTCGGATGCACACAGGAGAAAAACCGTTTATTTGTGATCAGTGCGGTAAGGGATTTTCTCAGAGCTCCGGTTTGTATACTCATCAAAAAGTCCATTCTAACGATAGGCCCTATACTTGTTCTATCTGTCctagaaaattcaaaataaagggAGACAGAGATATACACGTGAGAAAACATTCCGGGGAGCGCCCTTACAAGTGTGAATTTTGTGGCAAAGCATTCATGACACAACACGTTTACAGTCAACACAGAAAAATTCACACCGGAGAACGTCCTTACAAATGCGATATCTGTCATATCGCTTTTAGAAGGTCTCACGTGTTGACGGTTCACAAGAGAATTCACACCGGTGAAAAACCCAATTCTTGTGATATTTGCGGTAAACGGTACAGGCAAAAAGGTGATATGCTTAAACACAAGAGGATCCAACACGGCGCCGGATCTGTGAGGACTGTGCCACCGGGAAATCTGTTGAACTGA
Protein Sequence: MTVRPDLCTAGLTTDKKPFCRLCARYTNNCIYIFDEEEDSEEVSLITKINSCLPLAIDESDPLPKQICSQCFTIVEKCFKFSETAVESHFKLKERKRTKYLKGLSVLATSRGSEAKGTVDMSILCDFTDEHQSGVRSVCQLCQHGKMTHSSCSSFSEKLIAPYDSELYESDCSNDYNYPSNDFDNCDLGNMSVDSVLSIRSVDKINCLKPELSDVNGDYSPGKSRSEPKTIKNSPDNWEAADNAFGYSCMLCSADFRSSSDLFPHSLMHSEDGSYVCCLCNFVCDSKNDLAIHFKSHSVAPPDMIYQCNHCGMGSRDLSSFETHSCPLNSSTWTLNRCNVCNKTFRSESRLRFHKKFHEIGAKPGHCDMCPKVFSSEVKLYKHVTYLHGLGKERKSHCCEDCGKVFRTVSSLRYHQRAHLGETYLRPYSCDVCGKSFVRRSMLRNHITTVHKNLTINTECYMCKICSELFPTNDSILMHLEKLHPMMNSETSYETYTLNRVYICEFCKRCFASSLHVNNHRSKHRSDTPYECKHCIGEFCYSRELEAHHLHEHSDSIAKEYVIDFPIPAMFVCEYCDRAFVSSLKYTEHLTVHYGPTPYLCRYCDERFSYLGDLSSHRSFKHGDTDLIKNDSNYYRPFECHYCNKSFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSNDRPYTCSICPRKFKIKGDRDIHVRKHSGERPYKCEFCGKAFMTQHVYSQHRKIHTGERPYKCDICHIAFRRSHVLTVHKRIHTGEKPNSCDICGKRYRQKGDMLKHKRIQHGAGSVRTVPPGNLLN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743965;
90% Identity: iTF_00743965;
80% Identity: -