Glac029722.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578279.1:69942070-69969139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.02 3.3 9.9 2.0 1 23 190 212 190 212 0.95 2 29 1.2e-05 0.002 20.0 0.5 1 23 225 247 225 247 0.98 3 29 0.00053 0.088 14.9 0.2 2 23 258 280 257 280 0.96 4 29 0.00053 0.089 14.9 1.4 2 23 287 309 286 309 0.95 5 29 0.01 1.7 10.8 0.9 1 23 440 463 440 463 0.95 6 29 0.046 7.7 8.8 0.0 3 21 471 489 470 490 0.92 7 29 2.8 4.6e+02 3.2 0.9 1 23 501 523 501 523 0.97 8 29 0.0039 0.65 12.2 0.3 1 23 563 586 563 586 0.95 9 29 0.0047 0.78 11.9 0.1 1 23 597 620 597 620 0.97 10 29 2.6 4.3e+02 3.3 1.8 2 19 627 646 626 651 0.84 11 29 0.18 30 6.9 0.1 2 23 660 682 659 682 0.94 12 29 0.001 0.17 14.0 1.2 2 23 689 711 688 711 0.94 13 29 0.019 3.2 10.0 4.9 1 23 719 741 719 741 0.96 14 29 0.00076 0.13 14.4 0.3 2 23 808 830 807 830 0.95 15 29 0.26 43 6.4 0.5 2 23 837 858 836 858 0.95 16 29 0.0057 0.95 11.6 3.6 1 21 881 901 881 902 0.94 17 29 0.00014 0.023 16.7 1.4 2 23 924 946 923 946 0.96 18 29 0.00053 0.088 14.9 0.9 2 23 980 1003 979 1003 0.96 19 29 0.87 1.4e+02 4.8 0.9 1 23 1010 1033 1010 1033 0.96 20 29 0.0002 0.033 16.2 3.2 2 23 1071 1092 1071 1092 0.97 21 29 0.035 5.8 9.2 0.3 1 23 1097 1119 1097 1119 0.94 22 29 0.017 2.8 10.2 0.1 1 23 1209 1232 1209 1232 0.93 23 29 8.8 1.5e+03 1.6 0.2 2 19 1236 1253 1235 1256 0.75 24 29 0.094 16 7.8 0.3 3 23 1318 1339 1317 1339 0.96 25 29 0.2 34 6.8 0.5 2 23 1346 1368 1345 1368 0.95 26 29 7.4 1.2e+03 1.9 0.5 1 10 1413 1422 1413 1436 0.86 27 29 0.02 3.2 10.0 0.1 1 20 1474 1493 1474 1496 0.94 28 29 0.06 10 8.4 0.3 1 23 1502 1525 1502 1525 0.95 29 29 1.3 2.2e+02 4.2 0.1 1 19 1530 1548 1530 1551 0.91
Sequence Information
- Coding Sequence
- ATGGGTGAAGCGATATCCGAAGATAAGTTCGCCAGCCTTTGCAGGCTGTGCGCCACTCACGACATCATAAAAATGGACATCTACGGAGACAAAGGTAGACAGAGAAACCTGTCTGACAAGATATCTACATGTTTACCGTTCGAgGTATCTAAAAATGACAGTTTGCCGAAAGCTCTTTGTTATCAGTGTATCTTTCATCTCGAGACATTCTTTGACTTCAGGCGAGAATGTATTAAAGCCATATCACTTCTGGAAGATTTCCTCAGGCAGTCTGGGAAAAAGATAACTCCTTGCACAAGAACTGAACCACCTTGCCTGAAAATTGAAACAAGTGACCCTAGTTTGGCTGAGAATgaaatgTATTCTGATTGGCCCGGAAGTAAGGAGAGAAGTATTATTGGAGGGTTCAACAGCCCCGAGTCTCTTAACCCGTCAGATTTTCTAGAAGCTTGTTTGggAGATTCATCACCTCAGAGTGTCTCTGCAAGTGATACTAATAAGCCGTCTGAATCACCTGGACCTGTTGATGGCTTGGACAGTACTGAGAAAAGCACAGGTTCCGACGTATTCAAGTGTAAAGTTTGCTCCAGAGCATTTGGAAGCCACGCCTCTCTCGTCTTGCACTCAAAATTTCATGTAGATGGGAAAAAAAAGAGTGAAGTTCAAGAAATGTATCCTTGTTATGTATGCGACAAAGTGTTTGGTTCTAAGAGTCATCTTGCTGTTCATTCAAGGATACATATGTCAGAGAGTCATCATCTAAAACAAACAAGGTGCGAGCTTTGTGCCAAATCCTTTGCTAATTCCAAGCAACTGTGGATACACGTGTCTACCGTGCACCGTGGACATCCTCTCGTTACCTGTGAAATGTGTCAGAGGATGTTTTCATCTATATCTAATCTTCACGATCACGTCAGGCTTAAGCATAACACTTCCCATCAATTAGCTAAGCAGGCATTAGCGCAAAAGCAGcagaTAAAAGAAGAGATTGTTGATTCTCCTGGAGGTGGAGGAGGATCTGAAAACACGGACGACGATGGCAGAGGAGAGGACAGAAAAAGTATTGACGATGGATCAGCTGGAAATCGGAGGAAAATGTCTAAACCTAGAAAAATAGAAAGGGATTGCGAGTTGGATCCTGAGGGTAATCTGCCCACGTCTCAAGATGACCTGGGAGAATACGTTCCAGATGCAATCAAGGAAGAAATCATCCAGGATACTCAACTCTCAGGAGATCCAATAGAGcCTGGAGAATATGTACAAAGTGAAATAATGGACTGTGAATTCGCTGAGAATATGTTAGAAAGCGAGACGGTGTTCTGCTGTGAGATCTGTATCAGAGAGTTCAGCGATAGAGGTTCTCTGTGGCTTCACATGCTCTATACTCACAGAGATGAAGCATCCAAAGCGTGCGGCCTTTGCCTTAAGATCTTTAGCGATAATGATGCTCTCATTCAGCATGTAGAGACGTGCAATCCTCGTGGCACTGAAAGGAGAAGgTATAGTTGTACTGTTTGTGCAAGACAGCATGATTCAAGGAAGAAATTAGTTGCTCATGCCAGAATCCACCGGTTAACAGATGAGCAAGGCAACCCGATAGACCCCGAATccgttgttattttaaattcgaGCACTTACAACACTCCGGGAGGCTTTAATCACTCGGCAATTGACGAGGGAGCCGCCTACCAATGCACAGTTTGCTACAAACCTTTTGAAACCGAGGCCAAGATGATCAAGCACAAGGCATCTGCTCATAGGGAGAGCAAAACTCCAAACCCATACTATTTTGTGTGTGATATTTGCGGTCTCGCGAGCTCTTCTAGAACTGATAAATGGAGACACATATCAACTGATCACGCTGGAGATCCAACTGTAACTTGCCCTCAGCCACAGTGCAATAAGGTATTTGCAACAGAAGGTTTGAAGAAAGACCACTGTGATAGCCATCACGATATTCAAGGAGTGTATCCAAGTACTTGTGAAGTTTGTGGAAAATTATGGAATACCAGAGTCGAGTATTGGAAACATATGATGGGAGTTCACCCTGATTTGTTACCCTTAGTCTGTGGAGTCTGTctcaaggttttctgcAATTTAAGTGATCTAATCCATCACGTAAGAGACACCCACTATCCTCTGAGTGGAGGTGAGCACTGCTGTGACCTCTGTGGACGTCCATATTCTAAACTATCGAAGATGTCGCGCCATCGGAAAATTCACGCGACAGTTCCTATACCTGAAGATATTAGAATACTCGTAGAGAATCCTGTTCGAAACGACAGGGCTGAAGGTTCACATTTCATGGACATATCGGGACCACCGTATACTTGTGAACAGtgcctGGACATTGAGAATGCTGCCGTCTGTGATTCGTTGGAAGATTTAGGGGCACATCGGCGTGACGCTCACAACTCAGTGCCTTGCGACTTATGTACCAAGTTTTACTCGACCACATCGCAACTGTGGAAACATGTTAGCCGTGCCCACAAAGGTCATCCCGATGTTACTTGCCATGTTTGTAAACGGACTTCAGCCAATCGAGTCATTCTGACAGCTCACATTGGCAAGCATCGAGCTCAACTTCAAGCGAGGGAGAACTCCGAAGAACCAGATTTACCTGATTCAGAagatgcgcaacatgtttgctcCAAATGCAATAAAGTATTCAGGAAAGGTTCGTTGATGCGTAAACATCAGAAGCACTGTAAGGGACCACGTGCTGCTCCTGCCGTAGCCTCGTTGCCTCCTCCTGTCAACGGTATCAGCACGTGTGCTAAATGTGGCAAGCAATTCATGTCTCAGAACACGCTTTACAAACACATGAAGAGCGTTCACATCATATACAACTGTGAACTCTGTGAGGATTCTAAACATGACAGTAAAACTTTACTGTACCAACACATCGTAGAAATACATCATGATGATCACAGACTGAAaTGTGACTTTGACGGCTGTGATAAGATTCTTAGGACGAATTCAGACATGATGAAACATCGTCGGACTCATAATCAACTGCTTACCATCTACGTGTGCAAATTCTGTGCCGAACTCTTACCTAGCAAGATGAAGATGAGAAAACACATGAAACTAACTCATTCTTCCGATTCCAAATATCTATGCTTTGTATGTATGAAGGCCGCTGCCAGTTTCAAGGATCTAGAGGAACATGTGGCAGATAGTCATGGACCTCTTCTAAAGCGCCTGAACACATGTAAAGTTTGTGGTCGAACATGTTCCAGCAAATCTAAATTAGTCGATCATATTAAGAACCATAGCCCAGCTTTTCATCCTTGTAgattgtgtttaaaaatatttgaatccCCTGAATTACTTAAGGAGCATGTAGACAATCATCCTAAGGAATCGGCTgttgaagaagaagaagtagatgacgaagaagaggaagaaatagaagagGTGGAACTGGACGAGAGTAGTATCATGGATATAATAGGAGCAAGTACTGGGAAGGGAAGTGTTGGATCACTTCCTGATTCAGAGAGTGTCGACAGCCCCGATGTAGAAACTAATAAAACAACTGATACATCAACTACAGACGACTCTAAACGAAAAACTCATTCTGAAATGGAACACTCTCCTTGTAAGAAGATGAAAGTTGAATTCAGCTGTGTAGCATGCGATGAAACTTTTGAGTCACGATCTAGACTTCTTGCACATCAGGAGGAAGAACATGACGATGTTACTTGTAAGAAATGTGGCATTGTTAGTAGTGACATTGCTGAACACGAACGGCACAGCAAAAAAtgtgaagaagaagaaggaagGGAAGCTAGTCAGATTATTGAAACAATGATGACCCAGgATTCAGTGGGAAGTCCTAGCAGCCCTGAAGATTTTGAAACCACCAATGGTGAAATAATTGCTGAGCGTCTGTGCCGGAGTAAGAATCCCAGGAAAGTGTATATGGACGACTTGGCGCCTAGTGCTTGTCAGATTTGCGGTAAAGTCTGGCCCGCTAAAAAACATCTGTGGCAGCACTTGATTCGTTTTCACAAAACTGAAGCTTGCAGTACGTGTGGAGTGTGTCTTTCATGCTTCCCCGATTACAAGTCTCTAAGCGCCCACTTACTCTCAGAACATCCGTCCAACTACGACGGGGACGGTACTAATTTAACATGTAGAGTCTGTGGCAAGTATCACAATGCTCGTGCCAAGTTGCACAGTCACGTATCTATTCATGTGGGCCAAGAAGAAAGAGCATTAGCTCCCTCACACGTGTGTTTGATATGCAACAGAACCTTTCTTCTGTTCAACAAACTGTCCGAACACTTTTTTAACATTCATAAAAAAGAAGCGGAAATGTTAAAGAAAGTAAGAGTTAAAAAAGTGGCTGCATTACCCGGCAGGAGACGTAGGAGCAATCCCAAGAAAGTCCCCGACGCAAAGTTACCGTTTTACCAGTGTGATATTTGCTCTTTAGTTTTCGCCAGTGAAATCGGACTGACAAATCATAAATGGAGCCATAAAAACTCCGATAATTTCAAATGCGGTCAATGCGGTGAAGTTTTCCTTACCGTCGCCGGGCTAAAGGAACATAAATACACTAAACATCCGGGAACGGAATTCATCTGTGCAGAGTGTAAATGCGCTTTCGCTACTTACATCGGGTTAGCCGATCATAACAAGGCTTGTTCTGCCAAACAGAAAACTCTAGAACAAGAAATAGAAGAAGTGGAATCCGAAGACGAAGAAAATTCCGTCAGGATAGTCAAAGAAGACGACGATAAATCAGAAAGTTCTTCTAAGTCGGATTCGGATTCGTCCGATTCTTCCGACTCGTCGGACGATTCATCGGACAGTGAAGATAGCGATGAAAGTGCAGAAGACAACACCGgtcaaaagaaaacaaaagagcaAAGCACAGAAGAGTATACAAAGTGTGCCTTATCAGAGAGCAGTTCTTCAGACGACGAAGAAGAACCTACCAGTGTAACCCTAGCCGAGGGAGACATCGTGGAAATCGTCGAAGTCGATGCTAACGCTCCCTCTACAGAATag
- Protein Sequence
- MGEAISEDKFASLCRLCATHDIIKMDIYGDKGRQRNLSDKISTCLPFEVSKNDSLPKALCYQCIFHLETFFDFRRECIKAISLLEDFLRQSGKKITPCTRTEPPCLKIETSDPSLAENEMYSDWPGSKERSIIGGFNSPESLNPSDFLEACLGDSSPQSVSASDTNKPSESPGPVDGLDSTEKSTGSDVFKCKVCSRAFGSHASLVLHSKFHVDGKKKSEVQEMYPCYVCDKVFGSKSHLAVHSRIHMSESHHLKQTRCELCAKSFANSKQLWIHVSTVHRGHPLVTCEMCQRMFSSISNLHDHVRLKHNTSHQLAKQALAQKQQIKEEIVDSPGGGGGSENTDDDGRGEDRKSIDDGSAGNRRKMSKPRKIERDCELDPEGNLPTSQDDLGEYVPDAIKEEIIQDTQLSGDPIEPGEYVQSEIMDCEFAENMLESETVFCCEICIREFSDRGSLWLHMLYTHRDEASKACGLCLKIFSDNDALIQHVETCNPRGTERRRYSCTVCARQHDSRKKLVAHARIHRLTDEQGNPIDPESVVILNSSTYNTPGGFNHSAIDEGAAYQCTVCYKPFETEAKMIKHKASAHRESKTPNPYYFVCDICGLASSSRTDKWRHISTDHAGDPTVTCPQPQCNKVFATEGLKKDHCDSHHDIQGVYPSTCEVCGKLWNTRVEYWKHMMGVHPDLLPLVCGVCLKVFCNLSDLIHHVRDTHYPLSGGEHCCDLCGRPYSKLSKMSRHRKIHATVPIPEDIRILVENPVRNDRAEGSHFMDISGPPYTCEQCLDIENAAVCDSLEDLGAHRRDAHNSVPCDLCTKFYSTTSQLWKHVSRAHKGHPDVTCHVCKRTSANRVILTAHIGKHRAQLQARENSEEPDLPDSEDAQHVCSKCNKVFRKGSLMRKHQKHCKGPRAAPAVASLPPPVNGISTCAKCGKQFMSQNTLYKHMKSVHIIYNCELCEDSKHDSKTLLYQHIVEIHHDDHRLKCDFDGCDKILRTNSDMMKHRRTHNQLLTIYVCKFCAELLPSKMKMRKHMKLTHSSDSKYLCFVCMKAAASFKDLEEHVADSHGPLLKRLNTCKVCGRTCSSKSKLVDHIKNHSPAFHPCRLCLKIFESPELLKEHVDNHPKESAVEEEEVDDEEEEEIEEVELDESSIMDIIGASTGKGSVGSLPDSESVDSPDVETNKTTDTSTTDDSKRKTHSEMEHSPCKKMKVEFSCVACDETFESRSRLLAHQEEEHDDVTCKKCGIVSSDIAEHERHSKKCEEEEGREASQIIETMMTQDSVGSPSSPEDFETTNGEIIAERLCRSKNPRKVYMDDLAPSACQICGKVWPAKKHLWQHLIRFHKTEACSTCGVCLSCFPDYKSLSAHLLSEHPSNYDGDGTNLTCRVCGKYHNARAKLHSHVSIHVGQEERALAPSHVCLICNRTFLLFNKLSEHFFNIHKKEAEMLKKVRVKKVAALPGRRRRSNPKKVPDAKLPFYQCDICSLVFASEIGLTNHKWSHKNSDNFKCGQCGEVFLTVAGLKEHKYTKHPGTEFICAECKCAFATYIGLADHNKACSAKQKTLEQEIEEVESEDEENSVRIVKEDDDKSESSSKSDSDSSDSSDSSDDSSDSEDSDESAEDNTGQKKTKEQSTEEYTKCALSESSSSDDEEEPTSVTLAEGDIVEIVEVDANAPSTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743017;
- 90% Identity
- iTF_00743017;
- 80% Identity
- -