Basic Information

Insect: Gerris lacustris
Gene Symbol: -
Assembly: GCA_951217055.1
Location: OX578278.1:47443040-47456412[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.34 56 6.1 0.2 1 23 294 316 294 316 0.90

2 12 1.9e-05 0.0031 19.5 1.6 1 23 324 346 324 346 0.99

3 12 0.012 2 10.6 1.0 1 23 353 375 353 375 0.97

4 12 3.7e-07 6.2e-05 24.8 1.0 1 23 381 403 381 403 0.99

5 12 4.2e-05 0.007 18.3 0.3 1 23 410 432 410 432 0.97

6 12 1.7e-05 0.0028 19.6 0.6 1 19 438 456 438 460 0.93

7 12 1.2e-05 0.0021 20.0 0.2 1 23 466 488 466 488 0.98

8 12 6.4e-06 0.0011 20.9 0.8 1 23 494 517 494 517 0.96

9 12 9.4e-06 0.0016 20.4 0.3 1 23 523 546 523 546 0.96

10 12 5.8e-06 0.00096 21.1 2.3 1 23 552 574 552 574 0.99

11 12 1.1e-05 0.0019 20.1 0.5 1 23 580 602 580 602 0.97

12 12 0.00034 0.057 15.5 0.1 1 23 608 632 608 632 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.34	56	6.1	0.2	1	23	294	316	294	316	0.90
2	12	1.9e-05	0.0031	19.5	1.6	1	23	324	346	324	346	0.99
3	12	0.012	2	10.6	1.0	1	23	353	375	353	375	0.97
4	12	3.7e-07	6.2e-05	24.8	1.0	1	23	381	403	381	403	0.99
5	12	4.2e-05	0.007	18.3	0.3	1	23	410	432	410	432	0.97
6	12	1.7e-05	0.0028	19.6	0.6	1	19	438	456	438	460	0.93
7	12	1.2e-05	0.0021	20.0	0.2	1	23	466	488	466	488	0.98
8	12	6.4e-06	0.0011	20.9	0.8	1	23	494	517	494	517	0.96
9	12	9.4e-06	0.0016	20.4	0.3	1	23	523	546	523	546	0.96
10	12	5.8e-06	0.00096	21.1	2.3	1	23	552	574	552	574	0.99
11	12	1.1e-05	0.0019	20.1	0.5	1	23	580	602	580	602	0.97
12	12	0.00034	0.057	15.5	0.1	1	23	608	632	608	632	0.92

Sequence Information

Coding Sequence: ATGACGGCAGACGCAGATAAAGGAAACGTAAACGTAGTTTGCTTGATATGCAATGCCAGTATTGGAGTTTCGACGAGAAATAGCTGTCCGATATTCAAATACAATGTTACTTCTTCCGAACAACCGGTCGCTAATATCCTCAGTGTTATTTTGGGCCAAGAAGTTCGCCAGGAGTTAGTTCACAGCGAAATTATATGTAAGAAATGTTTTAAGTTGTGCAACGAAGTCGATGAATTACAAGAGCGGCTGGCGGAAATTAAGATTGAGATAAATAACTACTACCAAAAGACCCTAAggaagtTGGAAGGTCATATGGATGAAGATGAGGATCTTAATTCATCTCAAGTAATCATCCTTTCACGAAATAATAAGGTAACTCCTTTGTCATCCAACTCTGGCTTAGGAGGTAAACGTGGCCGTCCTAGAAAATATCCCCTTTCGGAGGATCAGAATTCTATGAAGCATTCCCTTATGAACAGCATGGAGGAAATAATTGTTGGTGAGAGTGATGAAGATGATCCTCAAGGTATTGGGGTAGGTTTAGATGATGATAATGACAGCGATTATGCTCCTGATCCTAACAAACCCTTGAGAAAAGTAGAAGAAGCTCTCTTAGCTGGAACAGATGGTGTTCACATTAAAGTAGAGGTACTTGATGATGAAGAAAATGCTGTGGAAGCCTTAAGGAAGAAACAGAATTCACAATCTCCTATTAAGAAGAGCAGTAACACACCTGATCTTCCATCCATCATTCCTCAAATGattGTAAGCAGAAGCGAAAAGAATTATACTTGCTTGCTTTGTTCAGCTGAGAATAAGGTACAAGGCGAAGCTAAAGCCATAACACTTCATATGAAAGCGGAGCATAATATTCGCTTGTACATATGTGATATGTGTGGATTAGAGTTCCTTAAACGGAGTGAAATGTCTGCTCATTTTGATCAGCATGTTGCTAATGAAGAGGGCGACTTCCAGTGTGATATATGTAATAGGATATTTTCAAATCTTCGTCTCTTCAGAGTCCATAAAAGGATGCATCTTCCTCAAGCCAAGAACCACATTTGTGAAACTTGTGGAAAGGGATATTTATCTCGAAATATGTTAGAAGAGCATTATAATACTCATACTGGTAATCGCCCATACAAGTGCTCAGAGTGTGGTAAGGACTTCGCAAGCAAATACACACTCCGAGCTCATGAGAAGACCCATACCGATCGACCACGACCATATAAATGTGGTCAATGTGGTAAGGGTTTCATTACTGAACAGAATCTTATACAGCATGACCGTACTCACTCTGCTGTAAGGAACTTCACTTGCCAAATATGTGGAAAGGCTTTCAGCAGTGCCCGTAATTTAGAAGTGCATTGTGTTATTCATACAGGTTACAAGCCATTTATATGTAGAATATGCGGTAAAGCGTTTGCACGTAAAGCTGAGATACGTGACCATGAAAGAACTCACACAGGAGAAAAGCCTTACCAATGTGAATTCTGCGGAGCTACTTTTggacAAAGAAGTAATCTGCAAAGCCATAAGAGAGCAACCCACTATGATGATAAGAGATATCAATGTGTAGACTGTGGAAAAGCTTTTAAACGAAGAAGATTGTTAGACTACCACATTAAAGCCGCTCATACAGGTGAGCGACCATTTAAGTGTCAGGTGTGCGGAGCTACTTTTATATACCCTGAACACTTTAAGAAACATAGACGTATACATACTGGAGAGAAGCCTTATCAATGTGAGgtGTGCGGAAAAGCATTTAACAGTAGAGACAACCGTAATGCTCATAGATTTATACACAGTGACAAGAAACCCTATGAATGCCTAGTCTGCGGCATGGGCTTTATGAGAAAACCTCAATTGTACAATCACATGCAAGTCCAGGGTCATGTGAATGACACTATTGTAGTCAATCAGCCAAGGTTAACAACTGAAGAAGACTTAATTCCTCAGGCTGATGAAGTAGAAATGGCTATTATTACTGAATCTGATGGCACACACAACTTCATTCATCCTGACCAAGTTCATGAAGTTCATGAAAGAGATGGTGACACCAAGATGTTCATAAGTGAATTAAAGGAGCATGTAATTATTCAGGGTAAGGGTGGAGAGCAGGTTGTAGTAGATGATGAACAGCATTATAATGAAGTGGGTCATCTTATTATTGATGGACAGatTGTTGATCAAGAGACATTAGAACTGGAAGGAGCTGCAGATGGCACAACTGCACTTGTGGTTAGAGGTGCAGAAATAGGACCTGATGGTACTACCCAAGTTCAGACAGCTGATGGTCAAGTCCACTTAGTGCAGATTAGCATACCTGACTCTGACCAGCCAGCCTGGTTTAACATAGTACAGCAGTAA
Protein Sequence: MTADADKGNVNVVCLICNASIGVSTRNSCPIFKYNVTSSEQPVANILSVILGQEVRQELVHSEIICKKCFKLCNEVDELQERLAEIKIEINNYYQKTLRKLEGHMDEDEDLNSSQVIILSRNNKVTPLSSNSGLGGKRGRPRKYPLSEDQNSMKHSLMNSMEEIIVGESDEDDPQGIGVGLDDDNDSDYAPDPNKPLRKVEEALLAGTDGVHIKVEVLDDEENAVEALRKKQNSQSPIKKSSNTPDLPSIIPQMIVSRSEKNYTCLLCSAENKVQGEAKAITLHMKAEHNIRLYICDMCGLEFLKRSEMSAHFDQHVANEEGDFQCDICNRIFSNLRLFRVHKRMHLPQAKNHICETCGKGYLSRNMLEEHYNTHTGNRPYKCSECGKDFASKYTLRAHEKTHTDRPRPYKCGQCGKGFITEQNLIQHDRTHSAVRNFTCQICGKAFSSARNLEVHCVIHTGYKPFICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCVDCGKAFKRRRLLDYHIKAAHTGERPFKCQVCGATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPQLYNHMQVQGHVNDTIVVNQPRLTTEEDLIPQADEVEMAIITESDGTHNFIHPDQVHEVHERDGDTKMFISELKEHVIIQGKGGEQVVVDDEQHYNEVGHLIIDGQIVDQETLELEGAADGTTALVVRGAEIGPDGTTQVQTADGQVHLVQISIPDSDQPAWFNIVQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743016;
90% Identity: iTF_00743016;
80% Identity: -