Basic Information

Insect: Gerris buenoi
Gene Symbol: -
Assembly: GCA_001010745.2
Location: KZ652604.1:36293-55889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.38 52 6.1 0.2 1 23 240 262 240 262 0.90

2 12 2.1e-05 0.0028 19.5 1.6 1 23 270 292 270 292 0.99

3 12 0.014 1.8 10.7 1.0 1 23 299 321 299 321 0.97

4 12 4.2e-07 5.7e-05 24.9 1.0 1 23 327 349 327 349 0.99

5 12 4.8e-05 0.0065 18.4 0.3 1 23 356 378 356 378 0.97

6 12 1.9e-05 0.0026 19.7 0.6 1 19 384 402 384 406 0.93

7 12 1.4e-05 0.0019 20.1 0.2 1 23 412 434 412 434 0.98

8 12 7.2e-06 0.00098 21.0 0.8 1 23 440 463 440 463 0.96

9 12 1.1e-05 0.0014 20.5 0.3 1 23 469 492 469 492 0.96

10 12 6.5e-06 0.00088 21.1 2.3 1 23 498 520 498 520 0.99

11 12 1.3e-05 0.0017 20.2 0.5 1 23 526 548 526 548 0.97

12 12 0.00038 0.052 15.6 0.1 1 23 554 578 554 578 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.38	52	6.1	0.2	1	23	240	262	240	262	0.90
2	12	2.1e-05	0.0028	19.5	1.6	1	23	270	292	270	292	0.99
3	12	0.014	1.8	10.7	1.0	1	23	299	321	299	321	0.97
4	12	4.2e-07	5.7e-05	24.9	1.0	1	23	327	349	327	349	0.99
5	12	4.8e-05	0.0065	18.4	0.3	1	23	356	378	356	378	0.97
6	12	1.9e-05	0.0026	19.7	0.6	1	19	384	402	384	406	0.93
7	12	1.4e-05	0.0019	20.1	0.2	1	23	412	434	412	434	0.98
8	12	7.2e-06	0.00098	21.0	0.8	1	23	440	463	440	463	0.96
9	12	1.1e-05	0.0014	20.5	0.3	1	23	469	492	469	492	0.96
10	12	6.5e-06	0.00088	21.1	2.3	1	23	498	520	498	520	0.99
11	12	1.3e-05	0.0017	20.2	0.5	1	23	526	548	526	548	0.97
12	12	0.00038	0.052	15.6	0.1	1	23	554	578	554	578	0.92

Sequence Information

Coding Sequence: ATGACGGCGGACGCAGATAAAGGAAACGTAAACGTAGTTTGCTTGATATGCAATGCCAGTATCGGAGTTTCGACGAGAAATAGCTGCCCCATATTCAAATACAATGTTACTTCTTCCGAGCAACCGGTCGCTAATATCCTCAGTGTTATTTTGGGCCAAGAAGTTCGCCAGGAGTTAGTTCACAGCGAAATAATatgtaagaaatgttttaagttGTGCAACGAAGTCGACGAATTACAAGAGCGGCTGGCGGAAATCAAGATAGAGATAAACAACTACTATCAAAAGACCCTAAGgaAGTTGGAAGGCCATATGGATGAAGATGAGGATCTTAATTCTTCTCAAGTGATCATTCTTTCACGGAATAATAAGGTGACTCCTATCTCATCCAACTCTGGCTTAGGTGGTAAACGTGGCCGTCCTAGAAAATATCCCCTTTCAGAAGACCAGAACTCTATGAAGCATTCCCTTATGAACAGTATGGAGGTACTTGACGATGAAGAGAATGCTGTGGAAGCCCTTAGGAAGAAACAGAATTCACAATCTCCTATTAAGAAGAACAGTAACACTCCTGATCTTCCATCCATCATTCCTCAAATGaTTGTAAGCAGAAGCGAAAAGAACTACACTTGCTTGCTTTGTTCAGCTGAGAATAAGGTACAAGGCGAAGCTAAAGCCATAACACTTCATATGAAAGCCGAGCATAACATTCGCTTGTACATATGTGATATGTGTGGATTAGAGTTCCTCAAACGGAGCGAAATGTCTGCTCATTTCGATCAACATGTCGCTAATGAAGAGGGCGACTTCCAGTGTGATATATGTAATAGGATATTTTCAAATCTCCGTCTCTTCAGAGTCCATAAAAGGATGCATCTTCCTCAAGCCAAGAACCACATTTGTGAAACTTGCGGAAAGGGATATTTaTCTCGAAATATGTTAGAAGAGCATTATAATACTCATACTGGTAATCGCCCTTACAAGTGCTCCGAGTGTGGTAAGGACTTTGCTAGCAAATACACTCTCCGGGCTCACGAGAAGACCCATACCGATCGACCACGACCATATAAATGTGGTCAATGTGGTAAGGGTTTCATTACTGAACAGAATCTCATACAGCATGACCGTACTCACTCTGCTGTAAGGAACTTCACTTGCCAAATATGTGGGAAGGCTTTCAGCAGTGCCCGCAATTTAGAAGTGCATTGTGTTATTCATACAGGCTACAAGCCATTTATATGTAGAATATGCGGTAAAGCATTCGCACGTAAAGCTGAGATACGTGACCACGAGAGAACTCACACTGGAGAAAAGCCTTACCAATGTGAATTCTGCGGAGCTACTTTTggACAAAGAAGTAATCTGCAAAGCCATAAGAGAGCAACCCACTATGATGATAAGAGATATCAATGTGTTGACTGCGGAAAAGCTTTTAAACGAAGAAGATTGTTAGACTATCATATTAAAGCCGCTCATACAGGCGAGCGACCATTTAAGTGTCAGGTGTGCGGagctacatttatttaccctgaACACTTTAAGAAACATAGACGTATACATACCGGAGAGAAGCCTTATCAATGCGAGgtGTGTGGAAAAGCTTTTAATAGCAGAGACAACCGCAATGCTCATAGATTTATACACAGTGACAAGAAACCCTACGAATGCTTAGTCTGCGGCATGGGCTTTATGAGAAAACCTCAATTGTACAATCACATGCAAGTTCAGGGTCACGTGAATGACACAATTGTTGTCAATCAGCCAAGATTGACAACTGAAGAAGACTTAATTCCTCAAGCCGATGAAGTAGAAATGGCTATTATTACTGAATCTGATGGCACACACAACTTCATTCATCCTGATCAAGTTCATGAAGTACATgaaagagATGGTGACACCAAGATGTTCATAAGTGAATTAAAGGAGCATGTTATTATTCAGGGTAAGGGCGGAGAGCAGGTTGTAGTAGATGATGAACAGCATTATAATGAAGTGGGACATCTTATTATTGATGGACAGATTGTTGATCAAGAGACATTAGAACTGGAAGGAGCTGCAGATGGCACAACTGCACTTGTGGTTAGAGGTGCTGAAATAGGGCCTGATGGTACCACTCAAGTGCAGACAGCTGATGGTCAGGTCCACTTGGTGCAGATTAGCATACCTGACTCTGACCAGCCAGCCTGgttttcaatggtcttttcagAAGTCTATTATTCTTTATACTACTGGTTTACTCTTCTGATAAAATCTGCCTACAACTtttga
Protein Sequence: MTADADKGNVNVVCLICNASIGVSTRNSCPIFKYNVTSSEQPVANILSVILGQEVRQELVHSEIICKKCFKLCNEVDELQERLAEIKIEINNYYQKTLRKLEGHMDEDEDLNSSQVIILSRNNKVTPISSNSGLGGKRGRPRKYPLSEDQNSMKHSLMNSMEVLDDEENAVEALRKKQNSQSPIKKNSNTPDLPSIIPQMIVSRSEKNYTCLLCSAENKVQGEAKAITLHMKAEHNIRLYICDMCGLEFLKRSEMSAHFDQHVANEEGDFQCDICNRIFSNLRLFRVHKRMHLPQAKNHICETCGKGYLSRNMLEEHYNTHTGNRPYKCSECGKDFASKYTLRAHEKTHTDRPRPYKCGQCGKGFITEQNLIQHDRTHSAVRNFTCQICGKAFSSARNLEVHCVIHTGYKPFICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFGQRSNLQSHKRATHYDDKRYQCVDCGKAFKRRRLLDYHIKAAHTGERPFKCQVCGATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPQLYNHMQVQGHVNDTIVVNQPRLTTEEDLIPQADEVEMAIITESDGTHNFIHPDQVHEVHERDGDTKMFISELKEHVIIQGKGGEQVVVDDEQHYNEVGHLIIDGQIVDQETLELEGAADGTTALVVRGAEIGPDGTTQVQTADGQVHLVQISIPDSDQPAWFSMVFSEVYYSLYYWFTLLIKSAYNF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743961;
90% Identity: iTF_00743961;
80% Identity: -