Glac028004.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578279.1:30338867-30339805[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-11 2.7e-08 35.0 0.0 2 41 13 52 12 55 0.89
Sequence Information
- Coding Sequence
- ATGTCTCGAAAGGTACACCCCCGGTGTTCCTATTCTgatgaagatttaaaaaaatcattgcaaGAAATAAGTAATGGAATGTCTATAAAGAAAgcctcaaaacaattttcaatacCTAGAAGTACACTccacagtaaaataaataatacaacgcCGACGGAAAGAAAAATTGGTCGTCAAACGATATTGACGAAGAACGAAgaactagaaataaaaaataagttacttaaTGAAATTGAAGTTGGATCGTTGTTACAgcaaaaagatattaaaaacacaattaaaacaattattagtgattttcccaggaaaaatttaTTTGCAAATAACAGCCCTGGTGACAAatggtttaaaatgttttttaaaagacaTCCGGATATACTAAAGAGGTGCACAGGTTTAATTTCAAAAGATTGTGATGCAGCGAGCAAAATGGACGCGAAACTACCCGTGTCTAATCAAGTTAAACTACAACAGAGAGGGTTGCCGTTGGAAATAATCAACATGGAttgttataaactaaataatgggGTCAAAGAAAGCAAGCAAGAAGAGTTGGAGCCAGACGCGGGGTTTTGTAAAGACACACGTCCAGGAAATACATATCCAACTATTGAAGATGATTCTGATTCATCTATATCTGACATGGAGCTGATACATTTAGGAGGTTCCAAGAATActctaaaaattgataattctaattatgacctaaataAACCATGTAGTGTTGATAAACCATCTAGTTCAAATTACGACCCCTCTGAGGTTACTCAACATAGACCTCCAGAGTTAAGAGAAAACGAACCATGTTTTGATACTGTAATGGAAATGTTACACCGTCTTGAATTTCTTTGGAGCTCCGACCAAGAAAGCAACTCTCATGGAGAAGagatacaatatataattacttctttaaGAATTCTGGGtgtcatatattaa
- Protein Sequence
- MSRKVHPRCSYSDEDLKKSLQEISNGMSIKKASKQFSIPRSTLHSKINNTTPTERKIGRQTILTKNEELEIKNKLLNEIEVGSLLQQKDIKNTIKTIISDFPRKNLFANNSPGDKWFKMFFKRHPDILKRCTGLISKDCDAASKMDAKLPVSNQVKLQQRGLPLEIINMDCYKLNNGVKESKQEELEPDAGFCKDTRPGNTYPTIEDDSDSSISDMELIHLGGSKNTLKIDNSNYDLNKPCSVDKPSSSNYDPSEVTQHRPPELRENEPCFDTVMEMLHRLEFLWSSDQESNSHGEEIQYIITSLRILGVIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743623; iTF_00743625; iTF_00743626; iTF_00743627; iTF_00743617; iTF_00743618; iTF_00743621; iTF_00743655; iTF_00743608; iTF_00743609; iTF_00743610; iTF_00743611; iTF_00743612; iTF_00743613; iTF_00743614; iTF_00743615; iTF_00743616;
- 90% Identity
- iTF_00743617;
- 80% Identity
- iTF_00743623;