Glac008550.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578276.1:80350850-80351791[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-12 4.6e-09 37.5 0.0 2 42 13 53 12 56 0.89
Sequence Information
- Coding Sequence
- ATGTCTCGAAAGGTACACCCCCGGTGTTCATATTCCAATGAAGATTTAAGAAAGTCGttgcatgaaataaataatggaatgtCTATAAacaaagcttcaaaaatattttcaatacctAGAAGTACACtacagaacaaaataaataataataaagtgccAATGGAAAGAAAAATGGGACCTCAAACGATATTGACGAAGAGCGAAGAactagaaataagaaataagttaCTTAAAGAAATTGAAGTTGGATCGTTGTTACAgcaaaaagatattaaaaacacaattaaaacaattcttagtgaatttcccaggaaaaatgtATTTGCAAATAACAGCCCTGGTGACAAATGGTTCaaactcttttttaaaagaCATCCGGATATACTAAAGAGGTGCACAGGTTTAATTTCAAAAGATTGTGATGCAGCGAGCAAAATGGACGCGAAACTACCCGTGTCTAATCAAGTTAAACTACAACAGAGAGGGTTGCCGTTGGAAATAATCAACATGGAttgttataaactaaataacctGGTCAAAGAAATCAAGCAAGAAGAGTTGGAGCCAGACGCGGGGTTTTGTAAAGACACACGACCAGGAAATACATATCCAGCTATTGAAGATGATTCTGATTCATCTATATCTGACATGGAGCTGATACATTTAAGAGGTTCCAAGAATActctaaaaattgataattctaATTATGACTTGAATAAAACATGTAGTGTTGATAAACCATCTAGTTCAAATTACGACCCCTCTGAGGTTACTCAACATAGACCTCCAGAGTTAAGAGAAAACGAACCATGTTTTAATACTGTAATGGAAATGTTACACCGTCTTGAATTTCTTTGGAACTCCGACCAAGAAAGCAACTCTCATGGAGAAGagatacaatatataattacttctttaaGAATTCTGGGtgtcatatattaa
- Protein Sequence
- MSRKVHPRCSYSNEDLRKSLHEINNGMSINKASKIFSIPRSTLQNKINNNKVPMERKMGPQTILTKSEELEIRNKLLKEIEVGSLLQQKDIKNTIKTILSEFPRKNVFANNSPGDKWFKLFFKRHPDILKRCTGLISKDCDAASKMDAKLPVSNQVKLQQRGLPLEIINMDCYKLNNLVKEIKQEELEPDAGFCKDTRPGNTYPAIEDDSDSSISDMELIHLRGSKNTLKIDNSNYDLNKTCSVDKPSSSNYDPSEVTQHRPPELRENEPCFNTVMEMLHRLEFLWNSDQESNSHGEEIQYIITSLRILGVIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743622;
- 90% Identity
- iTF_00743617;
- 80% Identity
- iTF_00743615; iTF_00743616;