Basic Information

Insect: Gerris buenoi
Gene Symbol: -
Assembly: GCA_001010745.2
Location: KZ658828.1:147-5908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 8.5 1.2e+03 1.9 0.2 2 20 132 150 131 152 0.91

2 21 0.12 17 7.7 0.1 2 23 211 232 210 232 0.95

3 21 0.059 8 8.7 0.1 2 23 244 265 243 265 0.96

4 21 0.64 87 5.4 0.3 1 23 308 331 308 331 0.95

5 21 0.12 16 7.7 3.6 2 23 335 356 335 356 0.93

6 21 0.011 1.4 11.0 0.2 2 23 364 386 363 386 0.96

7 21 0.79 1.1e+02 5.1 3.0 2 23 394 416 393 416 0.95

8 21 0.24 33 6.8 0.6 3 23 482 502 481 502 0.96

9 21 0.1 14 7.9 0.3 2 23 508 530 507 530 0.92

10 21 0.01 1.4 11.1 1.6 2 23 566 588 565 588 0.92

11 21 0.0048 0.65 12.1 0.3 1 23 690 712 690 712 0.96

12 21 9.4 1.3e+03 1.8 3.2 2 23 720 742 719 742 0.95

13 21 0.15 21 7.4 0.4 3 21 750 768 749 769 0.87

14 21 0.1 14 7.9 0.2 2 23 775 797 775 797 0.92

15 21 0.41 56 6.0 7.0 2 23 802 823 801 823 0.93

16 21 0.00026 0.035 16.1 0.8 1 23 831 853 831 853 0.97

17 21 0.0055 0.74 11.9 0.2 1 23 859 881 859 881 0.97

18 21 0.0011 0.15 14.1 6.8 1 23 887 909 887 909 0.98

19 21 0.0026 0.35 12.9 0.3 2 23 916 938 916 938 0.96

20 21 0.0019 0.25 13.4 2.4 1 23 944 966 944 966 0.98

21 21 0.0018 0.25 13.4 0.8 1 23 972 995 972 995 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	8.5	1.2e+03	1.9	0.2	2	20	132	150	131	152	0.91
2	21	0.12	17	7.7	0.1	2	23	211	232	210	232	0.95
3	21	0.059	8	8.7	0.1	2	23	244	265	243	265	0.96
4	21	0.64	87	5.4	0.3	1	23	308	331	308	331	0.95
5	21	0.12	16	7.7	3.6	2	23	335	356	335	356	0.93
6	21	0.011	1.4	11.0	0.2	2	23	364	386	363	386	0.96
7	21	0.79	1.1e+02	5.1	3.0	2	23	394	416	393	416	0.95
8	21	0.24	33	6.8	0.6	3	23	482	502	481	502	0.96
9	21	0.1	14	7.9	0.3	2	23	508	530	507	530	0.92
10	21	0.01	1.4	11.1	1.6	2	23	566	588	565	588	0.92
11	21	0.0048	0.65	12.1	0.3	1	23	690	712	690	712	0.96
12	21	9.4	1.3e+03	1.8	3.2	2	23	720	742	719	742	0.95
13	21	0.15	21	7.4	0.4	3	21	750	768	749	769	0.87
14	21	0.1	14	7.9	0.2	2	23	775	797	775	797	0.92
15	21	0.41	56	6.0	7.0	2	23	802	823	801	823	0.93
16	21	0.00026	0.035	16.1	0.8	1	23	831	853	831	853	0.97
17	21	0.0055	0.74	11.9	0.2	1	23	859	881	859	881	0.97
18	21	0.0011	0.15	14.1	6.8	1	23	887	909	887	909	0.98
19	21	0.0026	0.35	12.9	0.3	2	23	916	938	916	938	0.96
20	21	0.0019	0.25	13.4	2.4	1	23	944	966	944	966	0.98
21	21	0.0018	0.25	13.4	0.8	1	23	972	995	972	995	0.97

Sequence Information

Coding Sequence: cccTATGATGATCTGGACAAAGGAGTAGAAGATTTTGAGGAGCGAGACCAGAATGAATTCTTTGAGTCAAGATTTTGTGATGTAGTTCATTCTGATCCCAATGCTCAGAATGAAAACAATGCTCTCATTCAGGATGTACAATTTAAGACAGGTATAGAGAAGGAAAAGCTTTGTTGGCAGAATAGTGAGCAAAATGTCGATGATTACATTGTAAATTGTGAGCCTGGAAGTTCAGTTGCAAAAAATTCTGTTATCGATGACAATGCTTCAAATAACACTGTAACTGATGAATTAGGTAGTGAAATGTGTTTTGAATCTTTAGAAAATAGTGAAGTTCTGGGCTACACTcttgataacaaaaaaaataatgaagatatTAGTGCAGCTTATGTAGTATGTGAGTTGTGTAACACTTTGATGAAAACAGCTTCTGAAATGCGCAATCATGTTTGTGAAAACCAACAATtaggaagcaataataaaaaggtTACTTTTAAAGAGAATATTTGTGTTAATGATCAGagccaaaataaaaacaaaggtgATAGTGTGTTTGAAGTGTCTGCTACGGGAAGTCTGTTAGAAAGAGAATTAACCAAACCTTTGAAGAAAggtattaaattgaatttgtgTTGTTTTATATGTGATGCGATTCTGCCGAGTCGATCAGATTTAGCCTTGCATGTACTGAGCCACTACCCTGTCAAAAGGTCCAAAAAGAAGGGCACAGTGTGTCCAGTTTGTGATAGTAATTATACTTCCCTTATAGATTTTATGAATCATTATGATATGCATGTTGATGGTTCAGGTAACAAAAGAAAAGACAAAGAATCAGCAATTTGTAACAGAAAAGAGAAAGCTATCTCTGAAAAAGAATCCTCAACTGGAGTACCTCAACCCTGTGACGACATCTCAGATACATTTGCATGCCCTTTTTGTAAAAAGGCTAATAGTAATGATCTAGAGTTAAATGAtcacttgaaaataaaacacaatattaaTACCTGTCATCACTGTAAGAAAGAATTCCCatctgatttaaaattaaaagaacacTTGGTTCTTCATGAAGCTAAAGTTAAACCAAATCAATGTGAATACTGCTTGTCACGTTTTAATTCTGCAAAGGAATTAGAGAGCCACATTGAATCAGCACACGATCAAATTAAAGTGACTAAATCATGTCCCCTCTGTAGGAAGAGATGTGGTTCTAATTTCTCTGTCAAAAGTCATGTGCTTAAGAGTCACTATATACCTGTACTGCAGCAAGAGATCAGAGAAAAATATTCCCACGGTTCAGATCTTGTTGATGATATGAAGAGCTTAGGTGCATctgaaaaatttattaaaagcattATGGATATACATAAACCAATTGTAACcgaaaacaatcctaaaaactccaaaattattattaatgtcgaAGCTAGCGATGTTAGTTTCTGTTTGCTCTGTGGATTTTCAAGTAAAAGTGTGCCGAATTTAGACAGGCATCGTGAGAAACATTCCGCCAAGAAAATTCAGTGTCCTTTATGTGAGTACTTGAGCTGTGATAGTGACGAACTTACAGTCCATCTCTCAGATTCCCATGACATATTGATTTCTGAGAACTGTTGTCCACATTGCCTCAGTGAACCTGAAGAAGATATAATACTACATATGAAAGCTTTGCATGGAAAGTTTTACACTCATCtgacttgttttgtttgcaAAGAAATGTTTTTCAGCAAGGAAAATCTGAAGTATCACTTCAGCATCACACATTTGATCTCAGAGCAAAGATTTGGAGAAAAGGGAGATGATATGGAAATTGATGACAACAGTGTTGAAGCTGATGATCCTTTAGCAAACGGAAGTAGAGAATGTACTGATGATACCATGAACAATGAACTCACTGCTGCTTTAGAGAGTATTATTCCTGATTCACCACAGCAAGTTGAGCCTCTAGAAGCTGGGGAAAACAGCGAAAGCTTAACATCCTACCAAGACCATGTTTCAGCAGCACTCTCACTTTGTGACAAAGTAAATAATCAAGAGAATGAAATGTGCTTAGAACTTCAAAAAGGATTTATTTGCACCATATGTAGAAAAGAGTGTGTGTCTGCAGATGAGTTGGCTGTACACACTGGCAAACAttcaaaaaaagcaaataacaCTTCTTGTTTTTTCTGTTCTTTAGTACTTTATGACAACGAATGTCTCCATCAACATGTTATGAAAGAACACCcacaaaatattcataaatattgttttccGTGTAAAAAACCATTCAATTCTAAATTTGCTTTAGTTAAACACCTCAGCTCAAGGTCTTGCAGCAGGGTGTGTGTTATATGcaataaacagtttaaaaaaattgcacctTACATAAGACATTTAACTTACAGTCATAGAAAAGATTTAAAATGCTCCCATTGCAATAAATTGtgtagaaatttaaaacatttgaacTACCATGAAGCATTACACGAGAGGTACAAGGGTAAAGTGTTTAAGTGTGACGAGtgcgaaaaaacatttttgactccCAGTAGTTTAAAATCTCATTCCATATCACATACAGGTAACTACCAGTACGTGTGTGAGTTCTGTGGAAGAGGATTTCTTAGCAGCTACGGTCTCAACGAACACCGAGCTAGTCATACAAGAGATATCCGCTATTGTTGTGAGATCTGTGGTAAGAGTTTCCGCCTCTACGATACTTATCATAGGCACAGGCGACAGCACGATAATCCATACCCAGCAGAATGCTCAGAGTGTGGTATTAAGTTCCGTAATGCCTCTCGTGTAGCTGAACACAAGAGAAAAGTTCACACAGGTGAGCGTCCCTATGTTTGCCCTTATTGTCCCATGGCATTTAATGTAACTTCATCCTACCATATTCACCTTTGTAAGCATACAAAGATTTATCCTTACAATTGTGAAATTTGTAAGAGAGGTTTTGCCAGCAGGTTCAAATATGCTAACCATCTTGCTACTCGGCACAATGATTATTCTTTTGtcacttcaaaaaatgaaaCTGATAACAGTGATGAAAAGTAG
Protein Sequence: PYDDLDKGVEDFEERDQNEFFESRFCDVVHSDPNAQNENNALIQDVQFKTGIEKEKLCWQNSEQNVDDYIVNCEPGSSVAKNSVIDDNASNNTVTDELGSEMCFESLENSEVLGYTLDNKKNNEDISAAYVVCELCNTLMKTASEMRNHVCENQQLGSNNKKVTFKENICVNDQSQNKNKGDSVFEVSATGSLLERELTKPLKKGIKLNLCCFICDAILPSRSDLALHVLSHYPVKRSKKKGTVCPVCDSNYTSLIDFMNHYDMHVDGSGNKRKDKESAICNRKEKAISEKESSTGVPQPCDDISDTFACPFCKKANSNDLELNDHLKIKHNINTCHHCKKEFPSDLKLKEHLVLHEAKVKPNQCEYCLSRFNSAKELESHIESAHDQIKVTKSCPLCRKRCGSNFSVKSHVLKSHYIPVLQQEIREKYSHGSDLVDDMKSLGASEKFIKSIMDIHKPIVTENNPKNSKIIINVEASDVSFCLLCGFSSKSVPNLDRHREKHSAKKIQCPLCEYLSCDSDELTVHLSDSHDILISENCCPHCLSEPEEDIILHMKALHGKFYTHLTCFVCKEMFFSKENLKYHFSITHLISEQRFGEKGDDMEIDDNSVEADDPLANGSRECTDDTMNNELTAALESIIPDSPQQVEPLEAGENSESLTSYQDHVSAALSLCDKVNNQENEMCLELQKGFICTICRKECVSADELAVHTGKHSKKANNTSCFFCSLVLYDNECLHQHVMKEHPQNIHKYCFPCKKPFNSKFALVKHLSSRSCSRVCVICNKQFKKIAPYIRHLTYSHRKDLKCSHCNKLCRNLKHLNYHEALHERYKGKVFKCDECEKTFLTPSSLKSHSISHTGNYQYVCEFCGRGFLSSYGLNEHRASHTRDIRYCCEICGKSFRLYDTYHRHRRQHDNPYPAECSECGIKFRNASRVAEHKRKVHTGERPYVCPYCPMAFNVTSSYHIHLCKHTKIYPYNCEICKRGFASRFKYANHLATRHNDYSFVTSKNETDNSDEK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00744008;
90% Identity: iTF_00744008;
80% Identity: iTF_00743056;