Gang019155.1
Basic Information
- Insect
- Germaria angustata
- Gene Symbol
- Aef1
- Assembly
- GCA_963681545.1
- Location
- OY813000.1:1910368-1911639[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.017 1.5e+02 3.9 0.2 21 46 183 208 170 210 0.84 2 4 4.8e-05 0.43 12.0 0.0 21 51 211 241 209 242 0.88 3 4 0.01 92 4.6 0.1 21 51 239 269 237 270 0.87 4 4 0.00023 2.1 9.8 0.1 21 47 267 293 265 300 0.88
Sequence Information
- Coding Sequence
- atgcatataaaaaatctgCAACATGCTCACGCTGCTGCAGCAGCGGCAGCAGCAATGCCAAATTGTGAAATTGTAATCGTATCATCTTCAcctaatcataataataataacaataataatgaaagtaCAAATGGGGGATCGAGTAATGGCAGTGGCGGCAATGGAGGTACTGCTAATAATGGTCATCAACACCAGCAACAGCAACATGGTTCCACGGCAACAACAACTGAGATTCCAATACCGTTTATGCATTTGGCAGGAGTAACAGCTGAAGCACATGCTGCTGCCCAGGCGGCTGCTATGGCTGCTGCACAAGCAGCGGCTGCTCAAGCTGCCGCATCTGAACAGGGTGGCTCAAATGCACCACCACCGGGCAGTGCGCTGGCTCATCATCACGCCATATTGCAGCAACACCCTTTGGCACATTTGGTGGCCACTGCTGCTCACAGTCCTGCGTTATCCGAACAACATTTCATAGCACGCGATGGTACCGTCTTGACTAATGGCCATAATGGCAACTCGACGCCAGCATCGGGTGGACCTGCCCCTGAAAAACCATTTCAATGCAACGTCTGCGAAAGACGGTTCCGCCAATTAAGTACTCTTACGAATCATGTAAAAATCCATACTGGGGAAAAACCGTACAAATGTAATGTTTGTGATAAAACTTTCCGTCAATCGTCCACTTTGactaatcatttgaaaatacataCCGGCGAGAAGCCATTTAACTGTACCTATTGTCCAAAACATTTTCGTCAATTGAGTACATTGACAAACCACTTGAAAATTCATACAGGTGAAAAGCCTTTTGAATGTGCCGTGTGTAAAAAACAGTTCCGTCAATCTAGTACTCTTAATAATCACATAAAAATCCATGTTATGGACAAAGTCTACGTGCCCGTAAAGATTAAAACTGAGGAGGAGGAAGGATGA
- Protein Sequence
- MHIKNLQHAHAAAAAAAAMPNCEIVIVSSSPNHNNNNNNNESTNGGSSNGSGGNGGTANNGHQHQQQQHGSTATTTEIPIPFMHLAGVTAEAHAAAQAAAMAAAQAAAAQAAASEQGGSNAPPPGSALAHHHAILQQHPLAHLVATAAHSPALSEQHFIARDGTVLTNGHNGNSTPASGGPAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPFNCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00200414;
- 80% Identity
- iTF_00742235;