Gspi009546.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- -
- Assembly
- GCA_959613385.1
- Location
- OY390733.1:10222900-10225221[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0018 34 5.7 0.0 20 47 266 293 253 300 0.85 2 6 0.00049 9.3 7.5 0.1 21 44 295 318 291 323 0.91 3 6 0.00042 7.8 7.7 0.1 21 45 323 347 318 354 0.86 4 6 0.00096 18 6.6 0.6 21 45 351 375 347 384 0.90 5 6 0.00029 5.4 8.2 0.9 20 43 406 429 400 434 0.82 6 6 0.011 2e+02 3.2 0.0 18 44 432 458 429 465 0.85
Sequence Information
- Coding Sequence
- ATGGAATtggattttacaaaaatctgcagAGTGTGTATGAGCGAGGGCGTCATGATGCCTATATTCAAAgtgaacatttcaaaaaaaattatggctTGCGCTTCGATACAGGTCTGGCAAAACGACGGATTACCACCCCAAATCTGCAATAAGTGTTCGGCGAAATTACACATCGCCTTTCAGTTCAAAAGACAGTGCGAAAAGTCGGATTCTAAACTAAGACAGTACGTGTCTAACGTCGACGAACAAGCTACGCAACAGCAGCGGCAGAGGCAGCAACACGCGCAGCATCAAACCGCGAATCCGACGCAGACCAATTGCGTTTATAtagaatgcacgcccatgttgGACATACAAGAAGAGCAAAAGTTCGACGCGTTCGGAAACGTGACGCACACACAAGCGCCACCGCTcacacaaattaattacaacataCAGCCGCCCAGTACCGTAAATACCTTAGGTTACACGTTGCAGACAGTCGAACAAGTACAAGTTTATAATGGAACGTACACGATGCCTTTACAGCAAATGCAACCGACGAATATTATACAAGACCAGGTTATTAGTCAGCCTATCCACATACAAAATCACGCTCAATTCGTTCAACACGAACCGCAGCAGTTTTTAAATCCCGAGCACGTCCAAGAACAGCCTAAAGAATCGAAGGACATGATAAAAAAGAacgtgaaaatgaaaaaaggattAAACACGAGTCCGACAAATAGACAGTGTTCTACTTGCGGGAAGACTTTCGATACGACCGCAAAGTTGTCTCGACACATGAAAACACATTCGTCGGACATGCcttacaaatgtaaaatatgtacaaaagcGTTTTCACACAGtggaaattacaaaatacatttaCGGATGCACACCGACGAAAGACCTTTCGTTTGTGGTGTTTGTAATAAGGGATGTCGACAGGCACAAGATCTCGAAAAGCACATGAGAACACACACGGGGGAAAAACCACATCAGTGTCCCATGTGTCCGAAAGCTTTCTCGACAAGTTCCAATTTGACGGCGCACATAAGAACTCACACGGGAGAAAAACCATATGTGTGCTGTGTATGCCAAAAAGCGTTCTGTCAGTCTAACGAATTGACGAAGCACATGCGGACTCACACTGGGGAGAAGTCGCATATTTGTGATATTTGCAATAAAGGTTGTAACGGTTCCAGTGCACTAATAGTACATAGAAGATCACACACCGGTGAACGTCCGTACGTGTGCCCAATTTGCAATAAAAGTTTCACGCAATCCAGCTGCCTGTCTGTTCATCGAAAGAAGCACAATGACGAGAAGAaaattttatgtacaatttgCAATACTAGTTTTATCAGCGGCAACAACTTAAAAGAGCACCTACTTACGCATTCGCAGGACAAACAATTTGGTTGTAACTTGTGCGAAGTGCGATTCCTAACGGCAAATGATCTCGACGAGCACGTAAAGAACCACAATGAATAG
- Protein Sequence
- MELDFTKICRVCMSEGVMMPIFKVNISKKIMACASIQVWQNDGLPPQICNKCSAKLHIAFQFKRQCEKSDSKLRQYVSNVDEQATQQQRQRQQHAQHQTANPTQTNCVYIECTPMLDIQEEQKFDAFGNVTHTQAPPLTQINYNIQPPSTVNTLGYTLQTVEQVQVYNGTYTMPLQQMQPTNIIQDQVISQPIHIQNHAQFVQHEPQQFLNPEHVQEQPKESKDMIKKNVKMKKGLNTSPTNRQCSTCGKTFDTTAKLSRHMKTHSSDMPYKCKICTKAFSHSGNYKIHLRMHTDERPFVCGVCNKGCRQAQDLEKHMRTHTGEKPHQCPMCPKAFSTSSNLTAHIRTHTGEKPYVCCVCQKAFCQSNELTKHMRTHTGEKSHICDICNKGCNGSSALIVHRRSHTGERPYVCPICNKSFTQSSCLSVHRKKHNDEKKILCTICNTSFISGNNLKEHLLTHSQDKQFGCNLCEVRFLTANDLDEHVKNHNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00741165;
- 90% Identity
- iTF_00741165;
- 80% Identity
- iTF_00741165;