Gspi022705.1
Basic Information
- Insect
- Geotrupes spiniger
- Gene Symbol
- MBD2
- Assembly
- GCA_959613385.1
- Location
- OY390737.1:9306160-9306765[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-11 1.3e-07 32.2 0.1 3 72 7 95 5 100 0.86
Sequence Information
- Coding Sequence
- ATGAGCGTAACGATTGAAAAAACCAAATACGAGTGCAGCTCGTTACCGAAACGATGGCAACAGCGAGACGACGTTCTACGGAAGACCGGAATATCCGTTGGAAAAGTGGACGTCATGTATTACAGTCGCAGCCGGAACGACGCGTCGCTGGTCCCCCCGATACGTCAGACGGCTTCGATTTTCAAGCAGCCGGTCACGGTCGTAAACACGCAGCAGAGCAAGGTCAAAACCGACATAAAACACGGCACGTTGGAAAAACCGAAGCAGCTCATATGGGAAAAGAGGTTAGAGGGTCTGCGTGCATGCGACTTGGATGGCAGCGAGTTCGAAGCGATGGAACTACCGAAAGGTCTGAAACCCGTAGGTCCCAACGTCACGGAGGAAACGATCATACAGAGCGTCGCGACAGCTTTGCACGTGTCTACGCAACCTGTCACGGGGCAAACCGGCTCGAAATCGTCGCTGGAAAAGAATCCAGGTGTGTTTTTAGATCCGAAGCAGCCGTTAGTGCAAGCCGTGAACATCGCAGAGGATGACATCAAACGGCAAGAAGAACGTGTTGCTTTAGCACGAAAGAAACTTCAAGAGGCTCTGAAAGTTGTGTAA
- Protein Sequence
- MSVTIEKTKYECSSLPKRWQQRDDVLRKTGISVGKVDVMYYSRSRNDASLVPPIRQTASIFKQPVTVVNTQQSKVKTDIKHGTLEKPKQLIWEKRLEGLRACDLDGSEFEAMELPKGLKPVGPNVTEETIIQSVATALHVSTQPVTGQTGSKSSLEKNPGVFLDPKQPLVQAVNIAEDDIKRQEERVALARKKLQEALKVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01351724;
- 90% Identity
- iTF_01258030; iTF_00466203; iTF_00464864; iTF_00838563; iTF_01567908; iTF_00788904; iTF_00977992; iTF_00153195; iTF_00752971; iTF_00415117; iTF_00002576; iTF_00950867; iTF_01345715; iTF_00870580; iTF_00399157; iTF_01295191; iTF_00641466; iTF_00949882; iTF_01480122; iTF_01480890; iTF_01517244; iTF_01284542; iTF_01277914;
- 80% Identity
- -